LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE002831

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE002831

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE002831AT4G27030.1fatty acid desaturase A1positive
GWHGAAZE030179AT4G38690.1PLC-like phosphodiesterases superfamily protein0.94positive
GWHGAAZE000980AT1G52340.1NAD(P)-binding Rossmann-fold superfamily protein0.93positive
GWHGAAZE009352AT2G30040.1mitogen-activated protein kinase kinase kinase 140.93positive
GWHGAAZE020659AT5G04940.2SU(VAR)3-9 homolog 10.92positive
GWHGAAZE010940AT1G10830.115-cis-zeta-carotene isomerase0.92positive
GWHGAAZE030759AT3G02230.1reversibly glycosylated polypeptide 10.92positive
GWHGAAZE007756AT5G37550.1hypothetical protein;(source:Araport11)0.91positive
GWHGAAZE031137AT1G53840.1pectin methylesterase 10.91positive
GWHGAAZE011073AT4G13640.1Homeodomain-like superfamily protein0.91positive
GWHGAAZE023416AT4G37260.1myb domain protein 730.91positive
GWHGAAZE010985AT1G10830.115-cis-zeta-carotene isomerase0.91positive
GWHGAAZE000979AT1G52340.1NAD(P)-binding Rossmann-fold superfamily protein0.91positive
GWHGAAZE020925AT1G05680.1Uridine diphosphate glycosyltransferase 74E20.91positive
GWHGAAZE008933AT2G36090.1F-box family protein0.9positive
GWHGAAZE014653AT2G23060.1Acyl-CoA N-acyltransferases (NAT) superfamily protein0.9positive
GWHGAAZE002562AT1G30040.1gibberellin 2-oxidase0.9positive
GWHGAAZE020654AT1G73100.1SU(VAR)3-9 homolog 30.9positive
GWHGAAZE012671----0.9positive
GWHGAAZE021989AT3G23000.1CBL-interacting protein kinase 70.9positive
GWHGAAZE003978AT5G06570.2alpha/beta-Hydrolases superfamily protein0.9positive
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein0.89positive
GWHGAAZE015248AT4G29840.1Pyridoxal-5'-phosphate-dependent enzyme family protein0.89positive
GWHGAAZE012101AT4G14410.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.89positive
GWHGAAZE003257----0.89positive
GWHGAAZE032292AT1G64940.1cytochrome P450, family 87, subfamily A, polypeptide 60.89positive
GWHGAAZE018278AT1G29420.1SAUR-like auxin-responsive protein family 0.89positive
GWHGAAZE014322AT1G34780.1APR-like 40.89positive
GWHGAAZE028421AT5G11730.1Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein0.89positive
GWHGAAZE030090AT5G17540.1HXXXD-type acyl-transferase family protein0.89positive
GWHGAAZE004198AT1G22370.2UDP-glucosyl transferase 85A50.89positive
GWHGAAZE019222----0.89positive
GWHGAAZE030764AT5G50700.1hydroxysteroid dehydrogenase 10.88positive
GWHGAAZE010986AT1G10830.215-cis-zeta-carotene isomerase0.88positive
GWHGAAZE023138AT3G51550.1Malectin/receptor-like protein kinase family protein0.88positive
GWHGAAZE019597AT1G54940.1plant glycogenin-like starch initiation protein 40.88positive
GWHGAAZE016694AT1G42550.1plastid movement impaired10.88positive
GWHGAAZE026913AT4G27310.1B-box type zinc finger family protein0.88positive
GWHGAAZE033202----0.88positive
GWHGAAZE033124AT3G47500.1cycling DOF factor 30.88positive
GWHGAAZE014370AT5G39660.2cycling DOF factor 20.88positive
GWHGAAZE005955AT5G53110.1RING/U-box superfamily protein0.87positive
GWHGAAZE009597AT3G07090.1PPPDE putative thiol peptidase family protein0.87positive
GWHGAAZE011074AT3G24120.2Homeodomain-like superfamily protein0.87positive
GWHGAAZE000653AT2G30040.1mitogen-activated protein kinase kinase kinase 140.87positive
GWHGAAZE007720AT1G65890.1acyl activating enzyme 120.87positive
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein0.87positive
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 10.87positive
GWHGAAZE014997AT2G17080.1Arabidopsis protein of unknown function (DUF241)0.87positive
GWHGAAZE032774AT4G39330.1cinnamyl alcohol dehydrogenase 90.87positive
GWHGAAZE032775AT4G37980.1elicitor-activated gene 3-10.87positive
GWHGAAZE012536AT1G23030.1ARM repeat superfamily protein0.87positive
GWHGAAZE027158AT1G28280.2VQ motif-containing protein0.86positive
GWHGAAZE017612AT5G51040.1Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.0.86positive
GWHGAAZE023781AT2G22590.1UDP-Glycosyltransferase superfamily protein0.86positive
GWHGAAZE001078AT2G27690.1cytochrome P450, family 94, subfamily C, polypeptide 10.86positive
GWHGAAZE002743AT5G41550.1Disease resistance protein (TIR-NBS-LRR class) family0.86positive
GWHGAAZE012404AT5G23130.1Peptidoglycan-binding LysM domain-containing protein0.86positive
GWHGAAZE027621AT1G12640.1MBOAT (membrane bound O-acyl transferase) family protein0.86positive
GWHGAAZE031972AT3G05200.1RING/U-box superfamily protein0.86positive
GWHGAAZE004253AT3G54780.1Zinc finger (C3HC4-type RING finger) family protein0.86positive
GWHGAAZE030238AT1G29450.1SAUR-like auxin-responsive protein family 0.86positive
GWHGAAZE004197AT2G15490.3UDP-glycosyltransferase 73B40.86positive


Expression profiling, GSEA and motif analysis