LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE005051

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE005051

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE005051AT3G10370.1FAD-dependent oxidoreductase family protein1positive
GWHGAAZE005025AT1G16445.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein-0.67negative
GWHGAAZE004330AT5G44650.1Encodes a nucleus-encoded thylakoid protein, cooperates with the plastid-encoded Ycf3 protein in photosystem i assembly. Also induces tolerance to multiple environmental stresses and reduces photooxidative damage.-0.64negative
GWHGAAZE014237AT4G24450.1phosphoglucan, water dikinase-0.64negative
GWHGAAZE010165ATCG01110.1NAD(P)H dehydrogenase subunit H-0.64negative
GWHGAAZE027741AT5G47435.2formyltetrahydrofolate deformylase, putative-0.64negative
GWHGAAZE005076AT5G04360.1limit dextrinase-0.64negative
GWHGAAZE024336AT5G39940.1FAD/NAD(P)-binding oxidoreductase family protein-0.64negative
GWHGAAZE012317AT3G17180.1serine carboxypeptidase-like 33-0.64negative
GWHGAAZE025423AT3G27050.1plant/protein;(source:Araport11)-0.64negative
GWHGAAZE015471AT5G63910.1farnesylcysteine lyase-0.63negative
GWHGAAZE030753AT3G48590.1nuclear factor Y, subunit C1-0.63negative
GWHGAAZE005215AT5G28910.2alpha-(1,6)-fucosyltransferase;(source:Araport11)-0.62negative
GWHGAAZE000227AT2G48150.1glutathione peroxidase 4-0.62negative
GWHGAAZE027602AT3G61220.1NAD(P)-binding Rossmann-fold superfamily protein-0.62negative
GWHGAAZE027013AT5G35790.1glucose-6-phosphate dehydrogenase 1-0.62negative
GWHGAAZE031945AT5G27290.1stress regulated protein;(source:Araport11)-0.62negative
GWHGAAZE003462AT3G56830.1Protein of unknown function (DUF565)-0.61negative
GWHGAAZE019380AT5G27730.1Protein of unknown function (DUF1624)-0.61negative
GWHGAAZE016905AT5G09820.2Plastid-lipid associated protein PAP / fibrillin family protein-0.6negative
GWHGAAZE017002AT5G10250.1Phototropic-responsive NPH3 family protein-0.6negative
GWHGAAZE014106AT1G07700.1Thioredoxin superfamily protein-0.6negative
GWHGAAZE003091AT5G50840.2alpha-taxilin-like protein;(source:Araport11)-0.6negative
GWHGAAZE016602AT5G39590.1TLD-domain containing nucleolar protein-0.6negative
GWHGAAZE013412AT1G62350.1Pentatricopeptide repeat (PPR) superfamily protein-0.6negative
GWHGAAZE002891AT1G04970.1lipid-binding serum glycoprotein family protein-0.6negative
GWHGAAZE031559AT4G01560.1Ribosomal RNA processing Brix domain protein-0.59negative
GWHGAAZE027348AT5G47770.1farnesyl diphosphate synthase 1-0.59negative
GWHGAAZE013969AT5G66460.1Glycosyl hydrolase superfamily protein-0.59negative
GWHGAAZE017251AT1G74960.3fatty acid biosynthesis 1-0.59negative
GWHGAAZE001889AT1G07650.2Leucine-rich repeat transmembrane protein kinase-0.59negative
GWHGAAZE029728AT5G22250.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein-0.59negative
GWHGAAZE004299AT4G20030.1RNA-binding (RRM/RBD/RNP motifs) family protein-0.59negative
GWHGAAZE002680AT5G53900.2Serine/threonine-protein kinase WNK (With No Lysine)-related-0.58negative
GWHGAAZE025583AT2G26900.1Sodium Bile acid symporter family-0.58negative
GWHGAAZE006109AT1G27660.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein-0.58negative
GWHGAAZE022984AT1G67623.1F-box family protein-0.58negative
GWHGAAZE009893AT1G02850.2beta glucosidase 11-0.58negative
GWHGAAZE006396AT5G47020.1MraZ;(source:Araport11)-0.58negative
GWHGAAZE017938AT1G17720.2Protein phosphatase 2A, regulatory subunit PR55-0.58negative
GWHGAAZE023863AT1G35340.3ATP-dependent protease La (LON) domain protein-0.58negative
GWHGAAZE017426AT3G16000.1MAR binding filament-like protein 1-0.58negative
GWHGAAZE003129AT3G45740.1hydrolase family protein / HAD-superfamily protein-0.58negative
GWHGAAZE032979AT1G51100.1Chloroplast NADH dehydrogenase assembly protein. Mutants are defective in the accumulation of subcomplex A.-0.58negative
GWHGAAZE019044AT2G02410.1yacP-like NYN domain protein;(source:Araport11)-0.58negative
GWHGAAZE003125AT3G45630.1RNA binding (RRM/RBD/RNP motifs) family protein-0.58negative
GWHGAAZE021186AT3G28340.1galacturonosyltransferase-like 10-0.58negative
GWHGAAZE005632AT2G37160.2Transducin/WD40 repeat-like superfamily protein-0.58negative
GWHGAAZE000304AT5G64560.1magnesium transporter 9-0.58negative
GWHGAAZE009593AT3G24820.1BSD domain-containing protein-0.58negative
GWHGAAZE017343AT5G56760.1serine acetyltransferase 1;1-0.58negative
GWHGAAZE016567AT2G16370.1thymidylate synthase 1-0.58negative
GWHGAAZE018407AT2G21370.1xylulose kinase-1-0.58negative
GWHGAAZE025022AT1G12244.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein-0.57negative
GWHGAAZE006920AT2G34960.1cationic amino acid transporter 5-0.57negative
GWHGAAZE033650ATCG01110.1NAD(P)H dehydrogenase subunit H-0.57negative
GWHGAAZE010161ATCG01050.1NADH-Ubiquinone/plastoquinone (complex I) protein-0.57negative
GWHGAAZE023097AT1G27435.1hypothetical protein;(source:Araport11)-0.57negative
GWHGAAZE031041AT5G20510.1alfin-like 5-0.57negative
GWHGAAZE029813AT1G44910.1pre-mRNA-processing protein 40A-0.57negative
GWHGAAZE006442AT5G47660.1Homeodomain-like superfamily protein-0.57negative
GWHGAAZE022511AT2G01755.1hypothetical protein;(source:Araport11)-0.57negative
GWHGAAZE026000AT5G11350.1DNAse I-like superfamily protein-0.57negative
GWHGAAZE001854AT2G43820.1UDP-glucosyltransferase 74F2-0.57negative
GWHGAAZE018873AT1G65790.1receptor kinase 1-0.57negative
GWHGAAZE008579AT1G66980.1suppressor of npr1-1 constitutive 4-0.57negative
GWHGAAZE012704AT4G27700.1Rhodanese/Cell cycle control phosphatase superfamily protein-0.57negative
GWHGAAZE009643AT2G26520.1transmembrane protein;(source:Araport11)-0.57negative
GWHGAAZE031115AT3G14110.2Tetratricopeptide repeat (TPR)-like superfamily protein-0.57negative
GWHGAAZE002024AT5G50700.1hydroxysteroid dehydrogenase 1-0.57negative
GWHGAAZE013853AT1G78610.1mechanosensitive channel of small conductance-like 6-0.57negative
GWHGAAZE011098AT1G13570.1F-box/RNI-like superfamily protein-0.57negative
GWHGAAZE028801AT4G31980.1PPPDE thiol peptidase family protein;(source:Araport11)-0.57negative
GWHGAAZE029673AT1G11400.3partner of Y14-MAGO-0.56negative
GWHGAAZE003123AT5G13610.1Protein of unknown function (DUF155)-0.56negative
GWHGAAZE011508AT5G43960.2Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-0.56negative
GWHGAAZE005695AT5G03370.1acylphosphatase family-0.56negative
GWHGAAZE007474AT2G17030.1F-box family protein with a domain of unknown function (DUF295)-0.56negative
GWHGAAZE027553AT4G11410.1NAD(P)-binding Rossmann-fold superfamily protein-0.56negative
GWHGAAZE008072AT4G33460.1ABC transporter family protein-0.56negative
GWHGAAZE033340AT5G14210.1Leucine-rich repeat protein kinase family protein-0.56negative
GWHGAAZE033055AT5G38280.1PR5-like receptor kinase-0.56negative
GWHGAAZE002204AT1G03630.1protochlorophyllide oxidoreductase C-0.56negative
GWHGAAZE008195AT1G80930.1MIF4G domain-containing protein / MA3 domain-containing protein-0.56negative
GWHGAAZE032179AT4G30810.1serine carboxypeptidase-like 29-0.56negative
GWHGAAZE001376AT4G00620.1Amino acid dehydrogenase family protein-0.56negative
GWHGAAZE005667AT1G56190.2Phosphoglycerate kinase family protein-0.56negative
GWHGAAZE028981AT2G07180.2Protein kinase superfamily protein-0.56negative
GWHGAAZE032797AT5G48790.1Domain of unknown function (DUF1995)-0.56negative
GWHGAAZE022925AT2G27790.2RNA-binding (RRM/RBD/RNP motifs) family protein-0.56negative
GWHGAAZE001015AT5G22790.1reticulata-related 1-0.56negative
GWHGAAZE024971AT4G25340.1FK506 BINDING PROTEIN 53-0.56negative
GWHGAAZE007168AT3G57080.1Eukaryotic rpb5 RNA polymerase subunit family protein-0.56negative
GWHGAAZE015316AT4G26020.14/1 protein short form protein;(source:Araport11)-0.56negative
GWHGAAZE004876AT4G22190.1serine/arginine repetitive matrix-like protein;(source:Araport11)-0.56negative
GWHGAAZE030915AT1G52740.1histone H2A protein 9-0.56negative
GWHGAAZE002216AT5G54190.1protochlorophyllide oxidoreductase A-0.56negative


Expression profiling, GSEA and motif analysis