LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE005235

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE005235

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE005235AT5G38890.1Nucleic acid-binding, OB-fold-like protein1positive
GWHGAAZE007191AT1G80270.3PENTATRICOPEPTIDE REPEAT 5960.92positive
GWHGAAZE025771----0.91positive
GWHGAAZE026120AT2G24970.1spindle/kinetochore-associated protein;(source:Araport11)0.91positive
GWHGAAZE017382AT1G15215.2Encodes SHH1, a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component, and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.0.91positive
GWHGAAZE032513----0.9positive
GWHGAAZE014332AT5G64200.2ortholog of human splicing factor SC350.9positive
GWHGAAZE024963AT2G45440.1dihydrodipicolinate synthase0.9positive
GWHGAAZE022164AT1G04170.1eukaryotic translation initiation factor 2 gamma subunit0.9positive
GWHGAAZE008961AT2G27590.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.9positive
GWHGAAZE013456AT4G30000.1Dihydropterin pyrophosphokinase / Dihydropteroate synthase0.9positive
GWHGAAZE026831AT2G20530.2prohibitin 60.9positive
GWHGAAZE017698AT1G30230.2Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S60.89positive
GWHGAAZE022186AT3G06790.2plastid developmental protein DAG, putative0.89positive
GWHGAAZE023472AT3G49910.1Translation protein SH3-like family protein0.89positive
GWHGAAZE006935AT2G35040.1AICARFT/IMPCHase bienzyme family protein0.89positive
GWHGAAZE022162AT2G40290.1Eukaryotic translation initiation factor 2 subunit 10.89positive
GWHGAAZE018651AT4G33680.1Pyridoxal phosphate (PLP)-dependent transferases superfamily protein0.89positive
GWHGAAZE033600AT3G04710.3ankyrin repeat family protein0.89positive
GWHGAAZE016758AT5G23570.1XS domain-containing protein / XS zinc finger domain-containing protein-related0.89positive
GWHGAAZE012656AT5G24650.1Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein0.89positive
GWHGAAZE004550AT3G52580.1Ribosomal protein S11 family protein0.89positive
GWHGAAZE016953AT5G20890.1TCP-1/cpn60 chaperonin family protein0.88positive
GWHGAAZE019925AT5G57280.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.88positive
GWHGAAZE014810AT3G02530.1TCP-1/cpn60 chaperonin family protein0.88positive
GWHGAAZE019188AT2G47420.1Ribosomal RNA adenine dimethylase family protein0.88positive
GWHGAAZE006264AT4G16720.1Ribosomal protein L23/L15e family protein0.88positive
GWHGAAZE019185AT5G26860.1lon protease 10.88positive
GWHGAAZE004222AT2G37270.2ribosomal protein 5B0.88positive
GWHGAAZE018006AT5G60960.1Pentatricopeptide repeat (PPR) superfamily protein0.88positive
GWHGAAZE009823AT4G02930.1GTP binding Elongation factor Tu family protein0.88positive
GWHGAAZE031326AT1G01940.1Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein0.88positive
GWHGAAZE025120AT5G46570.1BR-signaling kinase 20.87positive
GWHGAAZE033556AT5G36950.1DegP protease 100.87positive
GWHGAAZE011993AT5G09500.1Ribosomal protein S19 family protein0.87positive
GWHGAAZE022844AT1G27090.1glycine-rich protein0.87positive
GWHGAAZE013152AT1G48090.1calcium-dependent lipid-binding family protein0.87positive
GWHGAAZE032529AT1G60080.13'-5'-exoribonuclease family protein0.87positive
GWHGAAZE031127AT3G04770.240s ribosomal protein SA B0.87positive
GWHGAAZE006290AT4G16830.1Hyaluronan / mRNA binding family0.87positive
GWHGAAZE019917AT5G62270.2Ribosomal protein L20;(source:Araport11). Required for proper mitochondrial cristae formation. Expressed throughout plant. Mutants are defective in late stages of megagametogenesis. Pollen tube defective. Gametophytic lethality is probably due to mitochondrial disfunction.0.87positive
GWHGAAZE027459AT4G10760.1mRNAadenosine methylase0.87positive
GWHGAAZE016394AT4G07410.1Transducin family protein / WD-40 repeat family protein0.87positive
GWHGAAZE026231AT3G57560.1N-acetyl-l-glutamate kinase0.87positive
GWHGAAZE024631AT1G67170.1sarcolemmal membrane-associated protein;(source:Araport11)0.87positive
GWHGAAZE024432AT4G10070.1KH domain-containing protein0.87positive
GWHGAAZE001245AT2G26770.2plectin-related0.86positive
GWHGAAZE003761AT2G37340.1arginine/serine-rich zinc knuckle-containing protein 330.86positive
GWHGAAZE017001AT4G39880.1Ribosomal protein L23/L15e family protein0.86positive
GWHGAAZE000052AT4G01900.1GLNB1 homolog0.86positive
GWHGAAZE008997AT2G27810.1nucleobase-ascorbate transporter 120.86positive
GWHGAAZE002960AT1G60620.1RNA polymerase I subunit 430.86positive
GWHGAAZE006451AT2G47610.1Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein0.86positive
GWHGAAZE005804AT3G52580.1Ribosomal protein S11 family protein0.86positive
GWHGAAZE030695AT3G48425.1DNAse I-like superfamily protein0.86positive
GWHGAAZE017024AT5G10360.1Ribosomal protein S6e0.86positive
GWHGAAZE000299AT5G14050.1Transducin/WD40 repeat-like superfamily protein0.86positive
GWHGAAZE026551AT5G05520.1Outer membrane OMP85 family protein0.86positive
GWHGAAZE024580AT1G63270.1non-intrinsic ABC protein 100.86positive
GWHGAAZE016767AT3G49010.3breast basic conserved 10.86positive
GWHGAAZE029771AT2G14830.2Regulator of Vps4 activity in the MVB pathway protein0.86positive
GWHGAAZE006623AT4G30930.1Ribosomal protein L210.86positive
GWHGAAZE027217AT4G36130.1Ribosomal protein L2 family0.86positive
GWHGAAZE021195AT4G13850.3glycine-rich RNA-binding protein 20.86positive
GWHGAAZE031110AT2G05840.120S proteasome subunit PAA20.86positive
GWHGAAZE017813AT5G62440.1Protein of unknown function (DUF3223)0.86positive
GWHGAAZE031229AT4G09320.1Nucleoside diphosphate kinase family protein0.86positive
GWHGAAZE032538AT1G79540.1Pentatricopeptide repeat (PPR) superfamily protein0.86positive
GWHGAAZE000223AT4G02930.1GTP binding Elongation factor Tu family protein0.86positive
GWHGAAZE002561AT2G33840.1Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial0.86positive
GWHGAAZE024996AT2G45240.1methionine aminopeptidase 1A0.86positive
GWHGAAZE009777AT1G34030.1Ribosomal protein S13/S18 family0.86positive


Expression profiling, GSEA and motif analysis