LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE008554

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE008554

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE008554AT2G26930.14-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase1positive
GWHGAAZE012173AT4G15563.1F-box-like protein;(source:Araport11)0.94positive
GWHGAAZE031151AT4G14210.1phytoene desaturase 30.94positive
GWHGAAZE006960AT4G19860.1alpha/beta-Hydrolases superfamily protein0.93positive
GWHGAAZE023512AT3G49800.1BSD domain-containing protein0.93positive
GWHGAAZE017896AT5G40250.1RING/U-box superfamily protein0.93positive
GWHGAAZE033552AT5G57360.1Galactose oxidase/kelch repeat superfamily protein0.93positive
GWHGAAZE009117AT5G60600.14-hydroxy-3-methylbut-2-enyl diphosphate synthase0.92positive
GWHGAAZE027477AT1G64510.1Translation elongation factor EF1B/ribosomal protein S6 family protein0.92positive
GWHGAAZE032450AT3G54360.1zinc ion binding0.91positive
GWHGAAZE018844AT1G22930.1T-complex protein 110.91positive
GWHGAAZE007689AT5G65960.1GTP binding0.91positive
GWHGAAZE031807AT1G30760.1FAD-binding Berberine family protein0.91positive
GWHGAAZE031459AT2G46340.1SPA (suppressor of phyA-105) protein family0.91positive
GWHGAAZE023511AT1G10140.1Uncharacterised conserved protein UCP0312790.91positive
GWHGAAZE013765AT5G47870.1cobalt ion-binding protein;(source:Araport11)0.9positive
GWHGAAZE008931AT3G44326.1F-box family protein0.9positive
GWHGAAZE022613AT2G01260.1Protein of unknown function (DUF789)0.9positive
GWHGAAZE012920----0.9positive
GWHGAAZE003997AT3G55290.1NAD(P)-binding Rossmann-fold superfamily protein0.89positive
GWHGAAZE027993AT5G45410.3Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.0.89positive
GWHGAAZE016177AT5G09360.1laccase 140.89positive
GWHGAAZE008845AT2G27510.1ferredoxin 30.89positive
GWHGAAZE031738AT5G13800.2pheophytinase0.89positive
GWHGAAZE004807AT5G28237.1Pyridoxal-5'-phosphate-dependent enzyme family protein0.88positive
GWHGAAZE015101AT5G17230.2PHYTOENE SYNTHASE0.88positive
GWHGAAZE026827AT1G06290.1acyl-CoA oxidase 30.88positive
GWHGAAZE024623AT4G28080.1Tetratricopeptide repeat (TPR)-like superfamily protein0.88positive
GWHGAAZE032574AT2G15490.3UDP-glycosyltransferase 73B40.88positive
GWHGAAZE008932AT2G36090.1F-box family protein0.88positive
GWHGAAZE026712AT3G12520.1sulfate transporter 4;20.88positive
GWHGAAZE004884AT4G22260.1Alternative oxidase family protein0.88positive
GWHGAAZE018483AT4G34350.14-hydroxy-3-methylbut-2-enyl diphosphate reductase0.88positive
GWHGAAZE014255AT5G10490.1MSCS-like 20.88positive
GWHGAAZE031952AT1G54710.1homolog of yeast autophagy 18 (ATG18) H0.88positive
GWHGAAZE005950AT4G23895.2Pleckstrin homology (PH) domain-containing protein0.88positive
GWHGAAZE005320AT5G01830.1ARM repeat superfamily protein0.87positive
GWHGAAZE015202AT5G65380.1MATE efflux family protein0.87positive
GWHGAAZE020040AT5G35330.3methyl-CPG-binding domain protein 020.87positive
GWHGAAZE012861AT5G04740.1ACT domain-containing protein0.87positive
GWHGAAZE006151AT4G22920.1non-yellowing 10.87positive
GWHGAAZE008897AT2G27510.1ferredoxin 30.87positive
GWHGAAZE029621AT5G49940.1NIFU-like protein 20.87positive
GWHGAAZE016217AT4G38060.2hypothetical protein;(source:Araport11)0.87positive
GWHGAAZE014359AT1G77930.2Chaperone DnaJ-domain superfamily protein0.87positive
GWHGAAZE016361AT5G49650.1xylulose kinase-20.87positive
GWHGAAZE016356AT3G53690.1RING/U-box superfamily protein0.87positive
GWHGAAZE009116AT5G60600.14-hydroxy-3-methylbut-2-enyl diphosphate synthase0.87positive
GWHGAAZE009047AT2G28200.1C2H2-type zinc finger family protein0.87positive
GWHGAAZE006189AT3G60780.1Protein of unknown function (DUF1442)0.87positive
GWHGAAZE005528AT2G28930.1protein kinase 1B0.87positive
GWHGAAZE029838AT4G37850.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.86positive
GWHGAAZE015925AT1G01720.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.86positive
GWHGAAZE006372AT1G32380.1phosphoribosyl pyrophosphate (PRPP) synthase 20.86positive
GWHGAAZE009526AT4G27990.1YGGT family protein0.86positive
GWHGAAZE002724AT4G27410.2NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.86positive
GWHGAAZE028430AT2G25930.1hydroxyproline-rich glycoprotein family protein0.86positive
GWHGAAZE010697AT1G60690.1NAD(P)-linked oxidoreductase superfamily protein0.86positive
GWHGAAZE027296AT3G20300.1Protein of unknown function (DUF3537)0.86positive


Expression profiling, GSEA and motif analysis