LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE014019

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE014019

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE014019AT1G75020.2lysophosphatidyl acyltransferase 41positive
GWHGAAZE027852AT4G17900.1PLATZ transcription factor family protein-0.64negative
GWHGAAZE004884AT4G22260.1Alternative oxidase family protein-0.63negative
GWHGAAZE018844AT1G22930.1T-complex protein 11-0.62negative
GWHGAAZE006014AT1G63970.1isoprenoid F-0.61negative
GWHGAAZE008845AT2G27510.1ferredoxin 3-0.61negative
GWHGAAZE009116AT5G60600.14-hydroxy-3-methylbut-2-enyl diphosphate synthase-0.61negative
GWHGAAZE012603AT1G64940.1cytochrome P450, family 87, subfamily A, polypeptide 6-0.61negative
GWHGAAZE009563AT3G25160.1ER lumen protein retaining receptor family protein-0.6negative
GWHGAAZE029621AT5G49940.1NIFU-like protein 2-0.6negative
GWHGAAZE028420AT4G32940.1gamma vacuolar processing enzyme-0.6negative
GWHGAAZE029487AT2G02370.2SNARE associated Golgi protein family-0.6negative
GWHGAAZE004702AT1G61110.1NAC domain containing protein 25-0.6negative
GWHGAAZE005843AT1G72680.1cinnamyl-alcohol dehydrogenase-0.6negative
GWHGAAZE025638AT4G13250.1NAD(P)-binding Rossmann-fold superfamily protein-0.6negative
GWHGAAZE011901AT1G08970.4nuclear factor Y, subunit C9-0.6negative
GWHGAAZE011338AT1G04780.1Ankyrin repeat family protein-0.59negative
GWHGAAZE007090AT3G57550.2guanylate kinase-0.59negative
GWHGAAZE007938AT4G39380.2TSL-kinase interacting-like protein;(source:Araport11)-0.59negative
GWHGAAZE014359AT1G77930.2Chaperone DnaJ-domain superfamily protein-0.59negative
GWHGAAZE002724AT4G27410.2NAC (No Apical Meristem) domain transcriptional regulator superfamily protein-0.59negative
GWHGAAZE009047AT2G28200.1C2H2-type zinc finger family protein-0.59negative
GWHGAAZE016177AT5G09360.1laccase 14-0.58negative
GWHGAAZE015338AT2G19830.1SNF7 family protein-0.58negative
GWHGAAZE015039AT4G35510.1PHD finger-like protein;(source:Araport11)-0.58negative
GWHGAAZE000986AT4G05160.1AMP-dependent synthetase and ligase family protein-0.58negative
GWHGAAZE020582AT1G08760.1Plant protein of unknown function (DUF936)-0.58negative
GWHGAAZE026642AT3G11410.1protein phosphatase 2CA-0.58negative
GWHGAAZE006162AT1G12520.1copper chaperone for SOD1-0.58negative
GWHGAAZE030766AT5G50700.1hydroxysteroid dehydrogenase 1-0.58negative
GWHGAAZE009312AT5G58960.3Plant protein of unknown function (DUF641)-0.58negative
GWHGAAZE009276-----0.58negative
GWHGAAZE023207AT3G18990.1AP2/B3-like transcriptional factor family protein-0.58negative
GWHGAAZE032992AT1G56170.2nuclear factor Y, subunit C2-0.58negative
GWHGAAZE007689AT5G65960.1GTP binding-0.58negative
GWHGAAZE029245AT3G05545.1RING/U-box superfamily protein-0.58negative
GWHGAAZE020868AT1G06800.1alpha/beta-Hydrolases superfamily protein-0.58negative
GWHGAAZE013932AT4G39090.1Papain family cysteine protease-0.58negative
GWHGAAZE005528AT2G28930.1protein kinase 1B-0.58negative
GWHGAAZE005634AT3G09770.2RING/U-box superfamily protein-0.58negative
GWHGAAZE015202AT5G65380.1MATE efflux family protein-0.57negative
GWHGAAZE002340AT3G21690.1MATE efflux family protein-0.57negative
GWHGAAZE004245AT1G08570.1atypical CYS HIS rich thioredoxin 4-0.57negative
GWHGAAZE008929AT2G36090.1F-box family protein-0.57negative
GWHGAAZE013765AT5G47870.1cobalt ion-binding protein;(source:Araport11)-0.57negative
GWHGAAZE033819AT1G09310.1Protein of unknown function, DUF538-0.57negative
GWHGAAZE022613AT2G01260.1Protein of unknown function (DUF789)-0.57negative
GWHGAAZE004807AT5G28237.1Pyridoxal-5'-phosphate-dependent enzyme family protein-0.57negative
GWHGAAZE028622AT2G25605.1DNA-directed RNA polymerase subunit beta;(source:Araport11)-0.57negative
GWHGAAZE000868AT3G26540.1Tetratricopeptide repeat (TPR)-like superfamily protein-0.57negative
GWHGAAZE005078AT3G10480.2NAC domain containing protein 50-0.57negative
GWHGAAZE030286AT1G17840.1white-brown complex homolog protein 11-0.57negative
GWHGAAZE016486AT5G44250.1Protein of unknown function DUF829, transmembrane 53-0.57negative
GWHGAAZE008201AT4G12070.1hypothetical protein;(source:Araport11)-0.57negative
GWHGAAZE010911AT5G39530.1Protein of unknown function (DUF1997)-0.57negative
GWHGAAZE005521AT5G02230.2Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.57negative
GWHGAAZE012173AT4G15563.1F-box-like protein;(source:Araport11)-0.57negative
GWHGAAZE018734AT4G33510.13-deoxy-d-arabino-heptulosonate 7-phosphate synthase-0.57negative
GWHGAAZE005048AT3G54850.1plant U-box 14-0.57negative
GWHGAAZE025552AT1G80160.2Lactoylglutathione lyase / glyoxalase I family protein-0.57negative
GWHGAAZE002677AT4G27540.1prenylated RAB acceptor 1.H-0.57negative
GWHGAAZE031952AT1G54710.1homolog of yeast autophagy 18 (ATG18) H-0.57negative
GWHGAAZE029941AT3G49190.1O-acyltransferase (WSD1-like) family protein-0.57negative
GWHGAAZE027296AT3G20300.1Protein of unknown function (DUF3537)-0.57negative
GWHGAAZE021688AT3G05290.1peroxisomal adenine nucleotide carrier 1-0.57negative
GWHGAAZE029917AT1G34750.1Protein phosphatase 2C family protein-0.56negative
GWHGAAZE010955AT5G39530.1Protein of unknown function (DUF1997)-0.56negative
GWHGAAZE031104AT5G07990.1Cytochrome P450 superfamily protein-0.56negative
GWHGAAZE023684AT5G21920.1YGGT family protein-0.56negative
GWHGAAZE006487AT4G04020.1fibrillin-0.56negative
GWHGAAZE000206AT3G63010.1alpha/beta-Hydrolases superfamily protein-0.56negative
GWHGAAZE005841AT1G72680.1cinnamyl-alcohol dehydrogenase-0.56negative
GWHGAAZE006151AT4G22920.1non-yellowing 1-0.56negative
GWHGAAZE008897AT2G27510.1ferredoxin 3-0.56negative
GWHGAAZE023927AT1G34370.2C2H2 and C2HC zinc fingers superfamily protein-0.56negative
GWHGAAZE024367AT2G04690.1Pyridoxamine 5'-phosphate oxidase family protein-0.56negative
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)-0.56negative
GWHGAAZE026827AT1G06290.1acyl-CoA oxidase 3-0.56negative
GWHGAAZE020895AT1G06800.1alpha/beta-Hydrolases superfamily protein-0.56negative
GWHGAAZE010942AT1G10830.215-cis-zeta-carotene isomerase-0.56negative
GWHGAAZE005704AT5G03560.1Tetratricopeptide repeat (TPR)-like superfamily protein-0.56negative
GWHGAAZE029932AT3G49190.1O-acyltransferase (WSD1-like) family protein-0.56negative
GWHGAAZE009000AT2G27830.1hypothetical protein;(source:Araport11)-0.56negative
GWHGAAZE031738AT5G13800.2pheophytinase-0.56negative
GWHGAAZE006092AT4G11570.2Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.56negative
GWHGAAZE009817AT2G48120.2pale cress protein (PAC)-0.56negative
GWHGAAZE007197AT3G55290.2NAD(P)-binding Rossmann-fold superfamily protein-0.56negative
GWHGAAZE015050AT5G65980.1Auxin efflux carrier family protein-0.56negative
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 1-0.56negative
GWHGAAZE022754AT1G13870.1calmodulin binding;purine nucleotide binding-0.56negative
GWHGAAZE031061AT1G54130.1RELA/SPOT homolog 3-0.56negative
GWHGAAZE016649AT1G78610.1mechanosensitive channel of small conductance-like 6-0.56negative
GWHGAAZE026760AT2G30860.1glutathione S-transferase PHI 9-0.56negative
GWHGAAZE012920-----0.56negative
GWHGAAZE009115AT2G29380.1highly ABA-induced PP2C gene 3-0.56negative


Expression profiling, GSEA and motif analysis