LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE014528

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE014528

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE014528AT4G36870.2BEL1-like homeodomain 21positive
GWHGAAZE012448AT5G13770.1Pentatricopeptide repeat (PPR-like) superfamily protein0.93positive
GWHGAAZE009476AT2G04039.1NdhV is loosely associated with the NDH complex and is required for stabilizing NDH subcomplexes A and E.0.92positive
GWHGAAZE030827AT1G73110.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.91positive
GWHGAAZE005948AT1G64430.2Pentatricopeptide repeat (PPR) superfamily protein0.91positive
GWHGAAZE023701AT5G21430.1Chaperone DnaJ-domain superfamily protein0.91positive
GWHGAAZE027224AT3G01440.1PsbQ-like 10.9positive
GWHGAAZE009455AT5G58260.1oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor0.9positive
GWHGAAZE016479AT1G45474.2photosystem I light harvesting complex gene 50.9positive
GWHGAAZE006366AT1G32520.1TLDc domain protein;(source:Araport11)0.9positive
GWHGAAZE012599AT1G64860.1sigma factor A0.9positive
GWHGAAZE009274AT3G46780.1plastid transcriptionally active 160.9positive
GWHGAAZE005368AT2G38330.1MATE efflux family protein0.9positive
GWHGAAZE018086AT1G25440.1B-box type zinc finger protein with CCT domain0.9positive
GWHGAAZE006454AT4G16410.1transmembrane protein;(source:Araport11)0.9positive
GWHGAAZE002097AT2G20570.2GBF's pro-rich region-interacting factor 10.9positive
GWHGAAZE005884AT1G64680.1beta-carotene isomerase D27;(source:Araport11)0.89positive
GWHGAAZE005985AT2G46270.1G-box binding factor 30.89positive
GWHGAAZE009496----0.89positive
GWHGAAZE016047AT4G37925.1subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex0.89positive
GWHGAAZE026648AT2G39730.1rubisco activase0.88positive
GWHGAAZE025775AT5G56860.1GATA type zinc finger transcription factor family protein0.88positive
GWHGAAZE027606AT2G32500.1Stress responsive alpha-beta barrel domain protein0.88positive
GWHGAAZE030386AT1G25440.1B-box type zinc finger protein with CCT domain0.88positive
GWHGAAZE019157AT1G56500.1haloacid dehalogenase-like hydrolase family protein0.88positive
GWHGAAZE008074AT5G64040.1photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)0.87positive
GWHGAAZE022962AT3G26570.2phosphate transporter 2;10.87positive
GWHGAAZE000639AT1G07110.1fructose-2,6-bisphosphatase0.87positive
GWHGAAZE030424AT5G23060.1calcium sensing receptor0.87positive
GWHGAAZE006543AT4G05180.1photosystem II subunit Q-20.87positive
GWHGAAZE021993AT5G43750.1NAD(P)H dehydrogenase 180.87positive
GWHGAAZE004946AT3G57520.1seed imbibition 20.87positive
GWHGAAZE021460AT3G47110.1Leucine-rich repeat protein kinase family protein0.87positive
GWHGAAZE031822AT2G17265.1homoserine kinase0.87positive
GWHGAAZE027960AT5G48790.1Domain of unknown function (DUF1995)0.86positive
GWHGAAZE000660AT5G58660.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.86positive
GWHGAAZE031423AT4G01370.1MAP kinase 40.86positive
GWHGAAZE009615AT2G20180.1phytochrome interacting factor 3-like 50.86positive
GWHGAAZE016377AT1G44920.1transmembrane protein;(source:Araport11)0.86positive
GWHGAAZE024756AT5G58140.2phototropin 20.86positive
GWHGAAZE020440AT3G59400.1enzyme binding;tetrapyrrole binding0.86positive
GWHGAAZE000219AT2G48070.2resistance to phytophthora 10.86positive
GWHGAAZE021518AT3G24140.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.86positive
GWHGAAZE032121AT5G35170.1adenylate kinase family protein0.86positive
GWHGAAZE030557AT5G50090.1D-ribose-binding periplasmic protein;(source:Araport11)0.86positive
GWHGAAZE021461AT5G44700.1Leucine-rich repeat transmembrane protein kinase0.86positive
GWHGAAZE001314AT1G79680.1WALL ASSOCIATED KINASE (WAK)-LIKE 100.86positive
GWHGAAZE030414AT1G74070.1Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein0.86positive
GWHGAAZE010968AT5G53110.1RING/U-box superfamily protein0.86positive
GWHGAAZE003268AT3G55800.1sedoheptulose-bisphosphatase0.86positive
GWHGAAZE032381AT1G44575.1Chlorophyll A-B binding family protein0.86positive
GWHGAAZE020500AT1G74040.12-isopropylmalate synthase 10.86positive
GWHGAAZE015720AT5G63930.1Leucine-rich repeat protein kinase family protein0.86positive
GWHGAAZE005629AT5G03150.1C2H2-like zinc finger protein0.86positive
GWHGAAZE006154AT4G11960.1PGR5-like B0.86positive
GWHGAAZE027916AT1G32080.1membrane protein, putative0.86positive
GWHGAAZE030635AT3G47470.1light-harvesting chlorophyll-protein complex I subunit A40.86positive
GWHGAAZE009359AT1G07120.1CHUP1-like protein;(source:Araport11)0.86positive


Expression profiling, GSEA and motif analysis