LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE016952

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE016952

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE016952AT5G09970.1cytochrome P450, family 78, subfamily A, polypeptide 71positive
GWHGAAZE004296AT1G31040.1PLATZ transcription factor family protein0.93positive
GWHGAAZE019187AT2G24100.1ATP-dependent DNA helicase;(source:Araport11)0.92positive
GWHGAAZE003813AT3G52500.1Eukaryotic aspartyl protease family protein0.91positive
GWHGAAZE023953AT1G29670.1GDSL-like Lipase/Acylhydrolase superfamily protein0.9positive
GWHGAAZE006976----0.9positive
GWHGAAZE022783AT3G01140.1myb domain protein 1060.89positive
GWHGAAZE013802AT4G38260.1Protein of unknown function (DUF833)0.89positive
GWHGAAZE013501AT5G15310.1myb domain protein 160.89positive
GWHGAAZE006101AT4G23060.1IQ-domain 220.89positive
GWHGAAZE009939AT2G30620.1winged-helix DNA-binding transcription factor family protein0.89positive
GWHGAAZE013322AT5G03790.1homeobox 510.88positive
GWHGAAZE027445AT1G01110.2IQ-domain 180.88positive
GWHGAAZE018642AT1G16630.1transmembrane protein;(source:Araport11)0.88positive
GWHGAAZE017328AT1G72970.1Glucose-methanol-choline (GMC) oxidoreductase family protein0.88positive
GWHGAAZE018989AT1G59750.4auxin response factor 10.88positive
GWHGAAZE012289AT2G23060.1Acyl-CoA N-acyltransferases (NAT) superfamily protein0.87positive
GWHGAAZE002153AT1G03780.2targeting protein for XKLP20.87positive
GWHGAAZE015850AT1G77720.1putative protein kinase 10.87positive
GWHGAAZE027039AT3G50660.1Cytochrome P450 superfamily protein0.87positive
GWHGAAZE006241AT5G47500.1Pectin lyase-like superfamily protein0.87positive
GWHGAAZE032142AT2G24280.1alpha/beta-Hydrolases superfamily protein0.87positive
GWHGAAZE009226AT2G28790.1Pathogenesis-related thaumatin superfamily protein0.86positive
GWHGAAZE022577AT5G17450.1Heavy metal transport/detoxification superfamily protein 0.86positive
GWHGAAZE004626AT5G45960.1GDSL-like Lipase/Acylhydrolase superfamily protein0.86positive


Expression profiling, GSEA and motif analysis