LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE024968

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE024968

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE024968AT1G01960.1SEC7-like guanine nucleotide exchange family protein1positive
GWHGAAZE023207AT3G18990.1AP2/B3-like transcriptional factor family protein-0.66negative
GWHGAAZE006212AT4G22590.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.63negative
GWHGAAZE005859AT2G36090.1F-box family protein-0.63negative
GWHGAAZE014864AT5G66450.2Phosphatidic acid phosphatase (PAP2) family protein-0.61negative
GWHGAAZE020925AT1G05680.1Uridine diphosphate glycosyltransferase 74E2-0.61negative
GWHGAAZE007756AT5G37550.1hypothetical protein;(source:Araport11)-0.6negative
GWHGAAZE008929AT2G36090.1F-box family protein-0.6negative
GWHGAAZE024394AT1G33290.1P-loop containing nucleoside triphosphate hydrolases superfamily protein-0.6negative
GWHGAAZE013965AT1G19640.1jasmonic acid carboxyl methyltransferase-0.6negative
GWHGAAZE010955AT5G39530.1Protein of unknown function (DUF1997)-0.59negative
GWHGAAZE032753AT4G15560.1Deoxyxylulose-5-phosphate synthase-0.59negative
GWHGAAZE033819AT1G09310.1Protein of unknown function, DUF538-0.59negative
GWHGAAZE010940AT1G10830.115-cis-zeta-carotene isomerase-0.59negative
GWHGAAZE025552AT1G80160.2Lactoylglutathione lyase / glyoxalase I family protein-0.59negative
GWHGAAZE015166AT4G39330.1cinnamyl alcohol dehydrogenase 9-0.59negative
GWHGAAZE000653AT2G30040.1mitogen-activated protein kinase kinase kinase 14-0.58negative
GWHGAAZE000642AT2G30040.1mitogen-activated protein kinase kinase kinase 14-0.58negative
GWHGAAZE003636AT1G35910.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.58negative
GWHGAAZE008933AT2G36090.1F-box family protein-0.58negative
GWHGAAZE025220AT3G63470.1serine carboxypeptidase-like 40-0.58negative
GWHGAAZE009607AT2G33150.1peroxisomal 3-ketoacyl-CoA thiolase 3-0.58negative
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 1-0.58negative
GWHGAAZE032774AT4G39330.1cinnamyl alcohol dehydrogenase 9-0.58negative
GWHGAAZE033207AT5G14970.1seed maturation-like protein;(source:Araport11)-0.58negative
GWHGAAZE010941AT1G10830.115-cis-zeta-carotene isomerase-0.58negative
GWHGAAZE016278AT2G14095.1hypothetical protein;(source:Araport11)-0.57negative
GWHGAAZE014593AT3G19270.1cytochrome P450, family 707, subfamily A, polypeptide 4-0.57negative
GWHGAAZE009597AT3G07090.1PPPDE putative thiol peptidase family protein-0.57negative
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein-0.57negative
GWHGAAZE030764AT5G50700.1hydroxysteroid dehydrogenase 1-0.57negative
GWHGAAZE010986AT1G10830.215-cis-zeta-carotene isomerase-0.57negative
GWHGAAZE018114AT3G24090.1glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases-0.57negative
GWHGAAZE011697AT1G08970.4nuclear factor Y, subunit C9-0.57negative
GWHGAAZE033896AT1G62290.2Saposin-like aspartyl protease family protein-0.57negative
GWHGAAZE024940AT1G12600.1UDP-N-acetylglucosamine (UAA) transporter family-0.57negative
GWHGAAZE025068AT1G02090.1Proteasome component (PCI) domain protein-0.57negative
GWHGAAZE004807AT5G28237.1Pyridoxal-5'-phosphate-dependent enzyme family protein-0.57negative
GWHGAAZE005703AT2G27920.1serine carboxypeptidase-like 51-0.57negative
GWHGAAZE013027AT2G38110.1glycerol-3-phosphate acyltransferase 6-0.57negative
GWHGAAZE026119AT4G31780.2monogalactosyl diacylglycerol synthase 1-0.57negative
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein-0.57negative
GWHGAAZE010942AT1G10830.215-cis-zeta-carotene isomerase-0.57negative
GWHGAAZE018278AT1G29420.1SAUR-like auxin-responsive protein family -0.57negative
GWHGAAZE023416AT4G37260.1myb domain protein 73-0.57negative
GWHGAAZE010985AT1G10830.115-cis-zeta-carotene isomerase-0.57negative
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 1-0.57negative
GWHGAAZE004884AT4G22260.1Alternative oxidase family protein-0.57negative
GWHGAAZE030090AT5G17540.1HXXXD-type acyl-transferase family protein-0.57negative
GWHGAAZE023254AT2G23610.1methyl esterase 3-0.57negative
GWHGAAZE011901AT1G08970.4nuclear factor Y, subunit C9-0.57negative
GWHGAAZE031973AT3G05210.1nucleotide repair protein, putative-0.56negative
GWHGAAZE028407AT2G26040.1PYR1-like 2-0.56negative
GWHGAAZE033789AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 2-0.56negative
GWHGAAZE015039AT4G35510.1PHD finger-like protein;(source:Araport11)-0.56negative
GWHGAAZE023964AT1G36940.1myotubularin-like protein;(source:Araport11)-0.56negative
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)-0.56negative
GWHGAAZE023781AT2G22590.1UDP-Glycosyltransferase superfamily protein-0.56negative
GWHGAAZE027634AT1G62990.1KNOTTED-like homeobox of Arabidopsis thaliana 7-0.56negative
GWHGAAZE015247AT5G35460.1membrane protein;(source:Araport11)-0.56negative
GWHGAAZE010911AT5G39530.1Protein of unknown function (DUF1997)-0.56negative
GWHGAAZE030179AT4G38690.1PLC-like phosphodiesterases superfamily protein-0.56negative
GWHGAAZE014829AT5G25620.2Flavin-binding monooxygenase family protein-0.56negative
GWHGAAZE009574AT3G25110.1fatA acyl-ACP thioesterase-0.56negative


Expression profiling, GSEA and motif analysis