Coexpression Network

Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE025945

Gene:
Yellow--query gene Green--co-expressed genes Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage
Complete white stage/Juvenile bud stage
Silver flowering stage/Juvenile bud stage
Gold flowering stage/Juvenile bud stage
Complete white stage/Third green stage
Silver flowering stage/Third green stage
Gold flowering stage/Third green stage
Silver flowering stage/Complete white stage
Gold flowering stage/Complete white stage
Gold flowering stage/Silver flowering stage

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)

Co-expressed genes of GWHGAAZE025945

Co-expression relationship

ID	Ortholog in Arabidopsis	Annotation	PCC	Relationship
GWHGAAZE025945	AT5G11520.1	aspartate aminotransferase 3	1	positive
GWHGAAZE001720	AT3G58750.1	citrate synthase 2	0.95	positive
GWHGAAZE022918	AT1G60420.1	DC1 domain-containing protein	0.9	positive
GWHGAAZE013765	AT5G47870.1	cobalt ion-binding protein;(source:Araport11)	0.89	positive
GWHGAAZE031886	AT3G04870.2	zeta-carotene desaturase	0.89	positive
GWHGAAZE022776	AT3G11810.1	transmembrane protein;(source:Araport11)	0.88	positive
GWHGAAZE030425	AT5G23050.1	acyl-activating enzyme 17	0.88	positive
GWHGAAZE032450	AT3G54360.1	zinc ion binding	0.88	positive
GWHGAAZE014881	AT2G18170.1	MAP kinase 7	0.88	positive
GWHGAAZE031807	AT1G30760.1	FAD-binding Berberine family protein	0.88	positive
GWHGAAZE000772	AT3G46460.1	ubiquitin-conjugating enzyme 13	0.87	positive
GWHGAAZE014571	AT5G66820.1	transmembrane protein;(source:Araport11)	0.86	positive
GWHGAAZE006487	AT4G04020.1	fibrillin	0.86	positive
GWHGAAZE008845	AT2G27510.1	ferredoxin 3	0.86	positive
GWHGAAZE011343	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3	0.86	positive
GWHGAAZE030294	AT1G73390.3	Endosomal targeting BRO1-like domain-containing protein	0.86	positive
GWHGAAZE007689	AT5G65960.1	GTP binding	0.86	positive
GWHGAAZE012655	AT3G49590.2	Autophagy-related protein 13	0.86	positive
GWHGAAZE020868	AT1G06800.1	alpha/beta-Hydrolases superfamily protein	0.86	positive
GWHGAAZE022453	AT2G02040.1	peptide transporter 2	0.86	positive
GWHGAAZE017853	AT3G47960.1	Major facilitator superfamily protein	0.86	positive
GWHGAAZE031151	AT4G14210.1	phytoene desaturase 3	0.86	positive

Expression profiling, GSEA and motif analysis