LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE028350

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE028350

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE028350AT4G38830.1cysteine-rich RLK (RECEPTOR-like protein kinase) 261positive
GWHGAAZE007083AT1G51570.1Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein0.96positive
GWHGAAZE012267AT3G06720.2importin alpha isoform 10.96positive
GWHGAAZE010495AT2G01050.1zinc ion binding;nucleic acid binding0.96positive
GWHGAAZE011527AT5G17680.1disease resistance protein (TIR-NBS-LRR class), putative0.96positive
GWHGAAZE020920ATMG00860.1DNA/RNA polymerases superfamily protein0.96positive
GWHGAAZE014430AT3G02100.1UDP-Glycosyltransferase superfamily protein0.96positive
GWHGAAZE031790AT5G01860.1C2H2 and C2HC zinc fingers superfamily protein0.96positive
GWHGAAZE010529AT2G40030.1nuclear RNA polymerase D1B0.96positive
GWHGAAZE011217AT4G08850.1Leucine-rich repeat receptor-like protein kinase family protein0.96positive
GWHGAAZE017179AT5G61480.1Leucine-rich repeat protein kinase family protein0.96positive
GWHGAAZE009645AT1G04040.1HAD superfamily, subfamily IIIB acid phosphatase 0.96positive
GWHGAAZE013583AT4G36250.1aldehyde dehydrogenase 3F10.96positive
GWHGAAZE011166AT1G35710.1Protein kinase family protein with leucine-rich repeat domain0.96positive
GWHGAAZE015781AT3G47570.1Leucine-rich repeat protein kinase family protein0.96positive
GWHGAAZE017956AT5G63110.1histone deacetylase 60.96positive
GWHGAAZE031309AT5G42800.1dihydroflavonol 4-reductase0.96positive
GWHGAAZE029538AT3G10270.1DNA GYRASE B10.95positive
GWHGAAZE023668AT2G34930.1disease resistance family protein / LRR family protein0.95positive
GWHGAAZE028991AT4G12010.1Disease resistance protein (TIR-NBS-LRR class) family0.95positive
GWHGAAZE016517AT4G31940.1cytochrome P450, family 82, subfamily C, polypeptide 40.94positive
GWHGAAZE008777----0.94positive
GWHGAAZE029230AT1G47980.1desiccation-like protein;(source:Araport11)0.94positive
GWHGAAZE022832AT5G62740.1SPFH/Band 7/PHB domain-containing membrane-associated protein family0.94positive
GWHGAAZE015371AT1G14520.2myo-inositol oxygenase 10.94positive
GWHGAAZE001607AT3G13610.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.94positive
GWHGAAZE033628AT5G17680.1disease resistance protein (TIR-NBS-LRR class), putative0.93positive
GWHGAAZE003531AT3G47460.1Structural maintenance of chromosomes (SMC) family protein0.93positive
GWHGAAZE028998----0.93positive
GWHGAAZE008406----0.92positive
GWHGAAZE033444AT4G36150.1Disease resistance protein (TIR-NBS-LRR class) family0.92positive
GWHGAAZE020020AT2G29120.1glutamate receptor 2.70.92positive
GWHGAAZE017082----0.91positive
GWHGAAZE017700AT3G48520.1cytochrome P450, family 94, subfamily B, polypeptide 30.91positive
GWHGAAZE014590AT5G44210.1erf domain protein 90.91positive
GWHGAAZE011022AT2G40250.1SGNH hydrolase-type esterase superfamily protein0.91positive
GWHGAAZE011525AT5G36930.2Disease resistance protein (TIR-NBS-LRR class) family0.91positive
GWHGAAZE008747AT4G38830.1cysteine-rich RLK (RECEPTOR-like protein kinase) 260.91positive
GWHGAAZE005491AT2G37820.1Cysteine/Histidine-rich C1 domain family protein0.91positive
GWHGAAZE027706AT2G28990.1Leucine-rich repeat protein kinase family protein0.91positive
GWHGAAZE013364AT1G68510.1LOB domain-containing protein 420.91positive
GWHGAAZE019100----0.91positive
GWHGAAZE025789AT4G33050.3calmodulin-binding family protein0.9positive
GWHGAAZE011966AT3G47110.1Leucine-rich repeat protein kinase family protein0.9positive
GWHGAAZE010423AT2G32390.3glutamate receptor 3.50.9positive
GWHGAAZE008260AT5G06720.1peroxidase 20.89positive
GWHGAAZE005329AT5G05340.1Peroxidase superfamily protein0.89positive
GWHGAAZE033567AT5G51990.1C-repeat-binding factor 40.89positive
GWHGAAZE019524AT1G21270.1wall-associated kinase 20.89positive
GWHGAAZE027274AT5G55090.1mitogen-activated protein kinase kinase kinase 150.88positive
GWHGAAZE011651AT3G23250.2myb domain protein 150.88positive
GWHGAAZE020028AT2G29120.1glutamate receptor 2.70.88positive
GWHGAAZE010520AT4G16960.1Disease resistance protein (TIR-NBS-LRR class) family0.88positive
GWHGAAZE010324AT1G35710.1Protein kinase family protein with leucine-rich repeat domain0.87positive
GWHGAAZE004241AT3G04030.2Homeodomain-like superfamily protein0.87positive
GWHGAAZE022878AT1G10480.1zinc finger protein 50.87positive
GWHGAAZE017701----0.87positive
GWHGAAZE013245AT1G31690.1Copper amine oxidase family protein0.87positive
GWHGAAZE020003AT2G29120.1glutamate receptor 2.70.87positive
GWHGAAZE015696AT2G41820.1Leucine-rich repeat protein kinase family protein0.87positive
GWHGAAZE013776AT1G20990.1Cysteine/Histidine-rich C1 domain family protein0.86positive
GWHGAAZE011247AT4G08850.1Leucine-rich repeat receptor-like protein kinase family protein0.86positive
GWHGAAZE014588AT1G03800.1ERF domain protein 100.86positive
GWHGAAZE021081AT1G35710.1Protein kinase family protein with leucine-rich repeat domain0.86positive
GWHGAAZE029294AT4G34135.1UDP-glucosyltransferase 73B20.86positive
GWHGAAZE016901AT1G49230.1RING/U-box superfamily protein0.86positive


Expression profiling, GSEA and motif analysis