PH01000000G6090's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G00440 : 1.10E-24
Blast annotation: Protein of unknown function (DUF3741)
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 3981560 | 3985400 |
| mRNA | 3981560 | 3985400 |
| exon | 3981560 | 3981779 |
| exon | 3981996 | 3982048 |
| exon | 3982634 | 3984116 |
| exon | 3984221 | 3984315 |
| exon | 3984403 | 3984649 |
| exon | 3984738 | 3985400 |
| CDS | 3981710 | 3981779 |
| CDS | 3981996 | 3982048 |
| CDS | 3982634 | 3984116 |
| CDS | 3984221 | 3984315 |
| CDS | 3984403 | 3984649 |
| CDS | 3984738 | 3985315 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001113 | HB-KNOX Transcription_Regulator(from iTAK) HB-other Transcription_Regulator(from PlantTFDB) cytokinesis microtubule cytoskeleton organization, microtubule binding, |
| coexpression network | CFinderM001114 | MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12552.7 | DUF3741 | 166 | 207 |
| PF14309.5 | DUF4378 | 690 | 834 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.