PH01000001G3190's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G73390 : 6.00E-133
Blast annotation: Endosomal targeting BRO1-like domain-containing protein
2.Location
Scaffold: PH01000001
Strand: -
| Region | Start | End |
| gene | 2079873 | 2084100 |
| mRNA | 2079873 | 2084100 |
| exon | 2079873 | 2080386 |
| exon | 2080607 | 2080795 |
| exon | 2081964 | 2082030 |
| exon | 2082124 | 2082220 |
| exon | 2082399 | 2082534 |
| exon | 2082634 | 2082692 |
| exon | 2082781 | 2082852 |
| exon | 2082957 | 2084100 |
| CDS | 2080183 | 2080386 |
| CDS | 2080607 | 2080795 |
| CDS | 2081964 | 2082030 |
| CDS | 2082124 | 2082220 |
| CDS | 2082399 | 2082534 |
| CDS | 2082634 | 2082692 |
| CDS | 2082781 | 2082852 |
| CDS | 2082957 | 2083209 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000075 | regulation of transcription, DNA-dependent, sequence-specific DNA binding transcription factor activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03097.17 | BRO1 | 75 | 330 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.