CFinderM000075's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
regulation of transcription, DNA-dependent,0.004446519GO:0006355
sequence-specific DNA binding transcription factor activity,0.011177097GO:0003700
integral to membrane,0.02765957GO:0016021

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000001G3190Endosomal targeting BRO1-like domain-containing proteinAT1G73390 (6.00E-133)
PH01000033G1890ABC transporter family proteinAT3G28345 (2.60E-34)
PH01000046G1730Integrase-type DNA-binding superfamily proteinAT1G64380 (1.70E-32)
PH01000073G0850-- (-)
PH01000122G1000NAC domain containing protein 102AT5G63790 (1.00E-51)
PH01000132G0430-- (-)
PH01000310G0500TIFY domain/Divergent CCT motif family proteinAT1G74950 (3.20E-26)
PH01000314G0470heat shock transcription factor B2AAT5G62020 (4.30E-63)
PH01000401G0200-AT3G48180 (1.20E-09)
PH01000507G0850ENTH/ANTH/VHS superfamily proteinAT4G40080 (7.40E-23)
PH01000511G1000hydroxysteroid dehydrogenase 1AT5G50700 (2.80E-88)
PH01000667G0350GBFs pro-rich region-interacting factor 1AT2G20570 (3.20E-68)
PH01001112G0150-- (-)
PH01001117G0550gamma tonoplast intrinsic proteinAT2G36830 (2.00E-109)
PH01001157G0040BAK1-interacting receptor-like kinase 1AT5G48380 (0.00E+00)
PH01001664G0370Nodulin MtN3 family proteinAT1G21460 (1.30E-83)
PH01002404G0320phosphate transporter 1;7AT3G54700 (3.00E-117)
PH01002627G0070Oxidoreductase, zinc-binding dehydrogenase family proteinAT4G13010 (4.00E-118)
PH01002844G0070nitrate transporter 1:2AT1G69850 (4.00E-164)
PH01003108G0020WRKY family transcription factorAT1G62300 (1.20E-73)
PH01003281G0080EF hand calcium-binding protein familyAT1G24620 (7.90E-36)
PH01004100G0170-- (-)
PH01004931G0030Inositol monophosphatase family proteinAT1G43670 (5.50E-94)
PH01005137G0020WRKY DNA-binding protein 72AT5G15130 (1.20E-67)
PH01021243G0010UDP-glucosyltransferase 73B2AT4G34135 (1.20E-78)
PH01164434G0010-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000024HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
photosystem I,
chlorophyll binding,
DNA binding,
Photosynthesis
regulation of transcription, DNA-dependent,
RLK-Pelle_LRR-Xa (from iTAK)
sequence-specific DNA binding,
Photosynthesis
details
CFinderM000030RLK-Pelle_LRR-Xa (from iTAK)
CAMK_CAMKL-CHK1 (from iTAK)
details
CFinderM000034RLK-Pelle_LRR-Xa (from iTAK)
fructose_1,6-bisphosphate_1-phosphatase_activity
details
CFinderM000065RLK-Pelle_LRR-Xa (from iTAK)
fatty-acyl-CoA_reductase_(alcohol-forming)_activity
details
CFinderM000094RLK-Pelle_LRR-Xa (from iTAK)
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_biosynthesis
fatty acid metabolic process,
details
CFinderM000113RLK-Pelle_LRR-Xa (from iTAK)
intrinsic to endoplasmic reticulum membrane,
ADP_binding
details
CFinderM000247RLK-Pelle_LRR-Xa (from iTAK)
protein binding,
translational elongation,
details
CFinderM000294RLK-Pelle_LRR-Xa (from iTAK)
photosystem I reaction center,
photosystem I,
ATP synthesis coupled proton transport,
Photosynthesis
hydrogen ion transporting ATP synthase activity, rotational mechanism,
details
CFinderM000318RLK-Pelle_LRR-Xa (from iTAK)
thylakoid membrane organization,
cell proliferation,
growth factor activity,
extracellular region,
photosystem II,
Photosynthesis
details
CFinderM000362RLK-Pelle_LRR-Xa (from iTAK)
leucyl-tRNA aminoacylation,
guanosine tetraphosphate metabolic process,
Aminoacyl-tRNA_biosynthesis
leucine-tRNA ligase activity,
rRNA processing,
ribosome binding,
aminoacyl-tRNA_editing_activity
tRNA aminoacylation for protein translation,
details
CFinderM000373RLK-Pelle_LRR-Xa (from iTAK)
SET Transcription_Regulator(from iTAK)
[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity,
transcription termination, DNA-dependent,
RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
chloroplast,
protein refolding,
details
CFinderM000386C2H2 Transcription_Regulator(from PlantTFDB)
GH18 Glycoside_Hydrolases
protein neddylation,
Tify Transcription_Regulator(from iTAK)
details
CFinderM000419RLK-Pelle_LRR-Xa (from iTAK)
Ribosome
Ribosome
translation,
rRNA processing,
structural constituent of ribosome,
details
CFinderM000424carboxylic acid metabolic process,
carboxy-lyase activity,
cellular amino acid metabolic process,
RLK-Pelle_LRR-Xa (from iTAK)
pyridoxal phosphate binding,
Ascorbate_and_aldarate_metabolism
Glutathione_metabolism
details
CFinderM000464extrinsic to membrane,
oxygen evolving complex,
photosystem II,
Photosynthesis
RLK-Pelle_LRR-Xa (from iTAK)
calcium ion binding,
details
CFinderM000484RLK-Pelle_LRR-Xa (from iTAK)
sigma factor activity,
heat shock protein binding,
details
CFinderM000564RLK-Pelle_LRR-Xa (from iTAK)
sigma factor activity,
transcription initiation, DNA-dependent,
details
CFinderM000565Ubiquinone_and_other_terpenoid-quinone_biosynthesis
leucyl-tRNA aminoacylation,
RLK-Pelle_LRR-Xa (from iTAK)
GT2 GlycosylTransferases
Aminoacyl-tRNA_biosynthesis
SET Transcription_Regulator(from iTAK)
prenyltransferase activity,
leucine-tRNA ligase activity,
aminoacyl-tRNA_editing_activity
details
CFinderM000628RLK-Pelle_LRR-Xa (from iTAK)
C2H2 Transcription_Regulator(from PlantTFDB)
details
CFinderM000669RLK-Pelle_LRR-Xa (from iTAK)
copper_ion_transmembrane_transport
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
copper ion transmembrane transporter activity,
details
CFinderM000699GH18 Glycoside_Hydrolases
Amino_sugar_and_nucleotide_sugar_metabolism
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
nitrogen compound metabolic process,
cellular protein modification process,
details
CFinderM000829RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
isopentenyl-diphosphate delta-isomerase activity,
Terpenoid_backbone_biosynthesis
CAMK_CAMKL-CHK1 (from iTAK)
details
CFinderM000859RLK-Pelle_LRR-Xa (from iTAK)
transcription termination, DNA-dependent,
thylakoid membrane,
photosystem I,
CAMK_CDPK (from iTAK)
Photosynthesis
details
CFinderM000943NAC Transcription_Regulator(from PlantTFDB)
GH18 Glycoside_Hydrolases
catalytic activity,
carbohydrate metabolic process,
Amino_sugar_and_nucleotide_sugar_metabolism
regulation of transcription, DNA-dependent,
details
CFinderM000980MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
details
CFinderM001007RLK-Pelle_LRR-Xa (from iTAK)
Terpenoid_backbone_biosynthesis
isopentenyl-diphosphate delta-isomerase activity,
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
transferase activity, transferring phosphorus-containing groups,
isoprenoid biosynthetic process,
details
CFinderM001008RLK-Pelle_LRR-Xa (from iTAK)
porphobilinogen synthase activity,
coproporphyrinogen oxidase activity,
tetrapyrrole biosynthetic process,
porphyrin-containing compound biosynthetic process,
Porphyrin_and_chlorophyll_metabolism
details
CFinderM001137RLK-Pelle_LRR-Xa (from iTAK)
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
Porphyrin_and_chlorophyll_metabolism
Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
mRNA_surveillance_pathway
details
CFinderM001240details
CFinderM001289RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Ascorbate_and_aldarate_metabolism
Retinol_metabolism
Porphyrin_and_chlorophyll_metabolism
Pentose_and_glucuronate_interconversions
Drug_metabolism_-_cytochrome_P450
Steroid_hormone_biosynthesis
Drug_metabolism_-_other_enzymes
details
CFinderM001323CMGC_GSK (from iTAK)
Glutathione_metabolism
Ascorbate_and_aldarate_metabolism
details
CFinderM001346plasma membrane,
RLK-Pelle_LRR-Xa (from iTAK)
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor,
ribonuclease III activity,
details
CFinderM001507Alanine,_aspartate_and_glutamate_metabolism
purine nucleotide biosynthetic process,
RLK-Pelle_LRR-Xa (from iTAK)
adenylosuccinate synthase activity,
[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity,
AGC_RSK-2 (from iTAK)
SET Transcription_Regulator(from iTAK)
chloroplast,
Purine_metabolism
protein phosphorylation,
details
CFinderM001533RLK-Pelle_LRR-Xa (from iTAK)
cytochrome b6f complex,
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
translation,
cation binding,
structural constituent of ribosome,
alpha-amylase activity,
large ribosomal subunit,
details
CFinderM001653WNK_NRBP (from iTAK)
RNA_transport
details

4.Expression profilings


Show details about module gene expression profiling