PH01000033G1890's details annotation
1.Annotation
ICBR annotation: multidrug resistance protein, putative, expressed
Blast result AT3G28345 : 2.60E-34
Blast annotation: ABC transporter family protein
2.Location
Scaffold: PH01000033
Strand: -
| Region | Start | End |
| gene | 1221270 | 1223913 |
| mRNA | 1221270 | 1223913 |
| exon | 1221270 | 1222252 |
| exon | 1222310 | 1222480 |
| exon | 1223522 | 1223913 |
| CDS | 1221776 | 1222252 |
| CDS | 1222310 | 1222480 |
| CDS | 1223522 | 1223731 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000075 | regulation of transcription, DNA-dependent, sequence-specific DNA binding transcription factor activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00664.22 | ABC_membrane | 128 | 240 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.