PH01000667G0350's details annotation
1.Annotation
ICBR annotation: myb-like DNA-binding domain containing protein, expressed
Blast result AT2G20570 : 3.20E-68
Blast annotation: GBFs pro-rich region-interacting factor 1
2.Location
Scaffold: PH01000667
Strand: -
| Region | Start | End |
| gene | 323162 | 325637 |
| mRNA | 323162 | 325637 |
| exon | 323162 | 324268 |
| exon | 324673 | 324750 |
| exon | 324887 | 325637 |
| CDS | 324101 | 324268 |
| CDS | 324673 | 324750 |
| CDS | 324887 | 325072 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000075 | regulation of transcription, DNA-dependent, sequence-specific DNA binding transcription factor activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GARP-G2-like |
| Transcription_Regulator(from PlantTFDB) | G2-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 185 | 234 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.