PH01001664G0370's details annotation
1.Annotation
ICBR annotation: nodulin MtN3 family protein, putative, expressed
Blast result AT1G21460 : 1.30E-83
Blast annotation: Nodulin MtN3 family protein
2.Location
Scaffold: PH01001664
Strand: +
| Region | Start | End |
| gene | 227459 | 232645 |
| mRNA | 227459 | 232645 |
| exon | 227459 | 228219 |
| exon | 228345 | 228381 |
| exon | 229015 | 229110 |
| exon | 230270 | 230552 |
| exon | 230795 | 230914 |
| exon | 231674 | 232645 |
| CDS | 228183 | 228219 |
| CDS | 228345 | 228381 |
| CDS | 229015 | 229110 |
| CDS | 230270 | 230552 |
| CDS | 230795 | 230914 |
| CDS | 231674 | 231877 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000075 | regulation of transcription, DNA-dependent, sequence-specific DNA binding transcription factor activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03083.15 | MtN3_slv | 8 | 96 |
| PF03083.15 | MtN3_slv | 133 | 215 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.