Annotation of co-expression genes

PH01002627G0070's details annotation

1.Annotation

ICBR annotation: dehydrogenase, putative, expressed

Blast result AT4G13010 : 4.00E-118
Blast annotation: Oxidoreductase, zinc-binding dehydrogenase family protein

2.Location

Scaffold: PH01002627
Strand: -

RegionStartEnd
gene3646639480
mRNA3646639480
exon3646637823
exon3793138041
exon3909739243
exon3935339480
CDS3711937823
CDS3793138041
CDS3909739243
CDS3935339421

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000075regulation of transcription, DNA-dependent,
sequence-specific DNA binding transcription factor activity,
integral to membrane,
coexpression networkCFinderM001240
coexpression networkCFinderM001653WNK_NRBP (from iTAK)
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08240.11ADH_N3596
PF13602.5ADH_zinc_N_2199328

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008270zinc ion binding
GO:0016491oxidoreductase activity
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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