CFinderM000424's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
carboxylic acid metabolic process,0.00015227GO:0019752
carboxy-lyase activity,0.000198123GO:0016831
cellular amino acid metabolic process,0.000338563GO:0006520
RLK-Pelle_LRR-Xa (from iTAK)0.001312131GFam
pyridoxal phosphate binding,0.004190294GO:0030170
Ascorbate_and_aldarate_metabolism0.027677075KEGG
Glutathione_metabolism0.027677075KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000399G0860cyclophilin 38AT3G01480 (3.00E-178)
PH01001157G0040BAK1-interacting receptor-like kinase 1AT5G48380 (0.00E+00)
PH01001213G0370alpha/beta-Hydrolases superfamily proteinAT4G12830 (3.70E-54)
PH01001395G0320Pyridoxal phosphate (PLP)-dependent transferases superfamily proteinAT2G20340 (2.50E-42)
PH01001395G0350Pyridoxal phosphate (PLP)-dependent transferases superfamily proteinAT2G20340 (7.80E-95)
PH01002051G0210thylakoidal ascorbate peroxidaseAT1G77490 (2.00E-156)
PH01022811G0010photosystem I P subunitAT2G46820 (4.20E-36)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000024HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
photosystem I,
chlorophyll binding,
DNA binding,
Photosynthesis
regulation of transcription, DNA-dependent,
RLK-Pelle_LRR-Xa (from iTAK)
sequence-specific DNA binding,
Photosynthesis
details
CFinderM000030RLK-Pelle_LRR-Xa (from iTAK)
CAMK_CAMKL-CHK1 (from iTAK)
details
CFinderM000034RLK-Pelle_LRR-Xa (from iTAK)
fructose_1,6-bisphosphate_1-phosphatase_activity
details
CFinderM000065RLK-Pelle_LRR-Xa (from iTAK)
fatty-acyl-CoA_reductase_(alcohol-forming)_activity
details
CFinderM000075regulation of transcription, DNA-dependent,
sequence-specific DNA binding transcription factor activity,
integral to membrane,
details
CFinderM000094RLK-Pelle_LRR-Xa (from iTAK)
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_biosynthesis
fatty acid metabolic process,
details
CFinderM000113RLK-Pelle_LRR-Xa (from iTAK)
intrinsic to endoplasmic reticulum membrane,
ADP_binding
details
CFinderM000247RLK-Pelle_LRR-Xa (from iTAK)
protein binding,
translational elongation,
details
CFinderM000294RLK-Pelle_LRR-Xa (from iTAK)
photosystem I reaction center,
photosystem I,
ATP synthesis coupled proton transport,
Photosynthesis
hydrogen ion transporting ATP synthase activity, rotational mechanism,
details
CFinderM000318RLK-Pelle_LRR-Xa (from iTAK)
thylakoid membrane organization,
cell proliferation,
growth factor activity,
extracellular region,
photosystem II,
Photosynthesis
details
CFinderM000362RLK-Pelle_LRR-Xa (from iTAK)
leucyl-tRNA aminoacylation,
guanosine tetraphosphate metabolic process,
Aminoacyl-tRNA_biosynthesis
leucine-tRNA ligase activity,
rRNA processing,
ribosome binding,
aminoacyl-tRNA_editing_activity
tRNA aminoacylation for protein translation,
details
CFinderM000373RLK-Pelle_LRR-Xa (from iTAK)
SET Transcription_Regulator(from iTAK)
[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity,
transcription termination, DNA-dependent,
RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
chloroplast,
protein refolding,
details
CFinderM000419RLK-Pelle_LRR-Xa (from iTAK)
Ribosome
Ribosome
translation,
rRNA processing,
structural constituent of ribosome,
details
CFinderM000464extrinsic to membrane,
oxygen evolving complex,
photosystem II,
Photosynthesis
RLK-Pelle_LRR-Xa (from iTAK)
calcium ion binding,
details
CFinderM000484RLK-Pelle_LRR-Xa (from iTAK)
sigma factor activity,
heat shock protein binding,
details
CFinderM000564RLK-Pelle_LRR-Xa (from iTAK)
sigma factor activity,
transcription initiation, DNA-dependent,
details
CFinderM000565Ubiquinone_and_other_terpenoid-quinone_biosynthesis
leucyl-tRNA aminoacylation,
RLK-Pelle_LRR-Xa (from iTAK)
GT2 GlycosylTransferases
Aminoacyl-tRNA_biosynthesis
SET Transcription_Regulator(from iTAK)
prenyltransferase activity,
leucine-tRNA ligase activity,
aminoacyl-tRNA_editing_activity
details
CFinderM000628RLK-Pelle_LRR-Xa (from iTAK)
C2H2 Transcription_Regulator(from PlantTFDB)
details
CFinderM000669RLK-Pelle_LRR-Xa (from iTAK)
copper_ion_transmembrane_transport
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
copper ion transmembrane transporter activity,
details
CFinderM000829RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
isopentenyl-diphosphate delta-isomerase activity,
Terpenoid_backbone_biosynthesis
CAMK_CAMKL-CHK1 (from iTAK)
details
CFinderM000859RLK-Pelle_LRR-Xa (from iTAK)
transcription termination, DNA-dependent,
thylakoid membrane,
photosystem I,
CAMK_CDPK (from iTAK)
Photosynthesis
details
CFinderM000980MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
details
CFinderM001007RLK-Pelle_LRR-Xa (from iTAK)
Terpenoid_backbone_biosynthesis
isopentenyl-diphosphate delta-isomerase activity,
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
transferase activity, transferring phosphorus-containing groups,
isoprenoid biosynthetic process,
details
CFinderM001008RLK-Pelle_LRR-Xa (from iTAK)
porphobilinogen synthase activity,
coproporphyrinogen oxidase activity,
tetrapyrrole biosynthetic process,
porphyrin-containing compound biosynthetic process,
Porphyrin_and_chlorophyll_metabolism
details
CFinderM001137RLK-Pelle_LRR-Xa (from iTAK)
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
Porphyrin_and_chlorophyll_metabolism
Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
mRNA_surveillance_pathway
details
CFinderM001289RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Ascorbate_and_aldarate_metabolism
Retinol_metabolism
Porphyrin_and_chlorophyll_metabolism
Pentose_and_glucuronate_interconversions
Drug_metabolism_-_cytochrome_P450
Steroid_hormone_biosynthesis
Drug_metabolism_-_other_enzymes
details
CFinderM001346plasma membrane,
RLK-Pelle_LRR-Xa (from iTAK)
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor,
ribonuclease III activity,
details
CFinderM001507Alanine,_aspartate_and_glutamate_metabolism
purine nucleotide biosynthetic process,
RLK-Pelle_LRR-Xa (from iTAK)
adenylosuccinate synthase activity,
[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity,
AGC_RSK-2 (from iTAK)
SET Transcription_Regulator(from iTAK)
chloroplast,
Purine_metabolism
protein phosphorylation,
details
CFinderM001533RLK-Pelle_LRR-Xa (from iTAK)
cytochrome b6f complex,
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
translation,
cation binding,
structural constituent of ribosome,
alpha-amylase activity,
large ribosomal subunit,
details

4.Expression profilings