|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | carboxylic acid metabolic process, | 0.00015227 | GO:0019752 | | carboxy-lyase activity, | 0.000198123 | GO:0016831 | | cellular amino acid metabolic process, | 0.000338563 | GO:0006520 | | RLK-Pelle_LRR-Xa (from iTAK) | 0.001312131 | GFam | | pyridoxal phosphate binding, | 0.004190294 | GO:0030170 | | Ascorbate_and_aldarate_metabolism | 0.027677075 | KEGG | | Glutathione_metabolism | 0.027677075 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000399G0860 | cyclophilin 38 | AT3G01480 (3.00E-178) | | PH01001157G0040 | BAK1-interacting receptor-like kinase 1 | AT5G48380 (0.00E+00) | | PH01001213G0370 | alpha/beta-Hydrolases superfamily protein | AT4G12830 (3.70E-54) | | PH01001395G0320 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | AT2G20340 (2.50E-42) | | PH01001395G0350 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | AT2G20340 (7.80E-95) | | PH01002051G0210 | thylakoidal ascorbate peroxidase | AT1G77490 (2.00E-156) | | PH01022811G0010 | photosystem I P subunit | AT2G46820 (4.20E-36) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000024 | HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
photosystem I,
chlorophyll binding,
DNA binding,
Photosynthesis
regulation of transcription, DNA-dependent,
RLK-Pelle_LRR-Xa (from iTAK)
sequence-specific DNA binding,
Photosynthesis
| details | | CFinderM000030 | RLK-Pelle_LRR-Xa (from iTAK)
CAMK_CAMKL-CHK1 (from iTAK)
| details | | CFinderM000034 | RLK-Pelle_LRR-Xa (from iTAK)
fructose_1,6-bisphosphate_1-phosphatase_activity
| details | | CFinderM000065 | RLK-Pelle_LRR-Xa (from iTAK)
fatty-acyl-CoA_reductase_(alcohol-forming)_activity
| details | | CFinderM000075 | regulation of transcription, DNA-dependent,
sequence-specific DNA binding transcription factor activity,
integral to membrane,
| details | | CFinderM000094 | RLK-Pelle_LRR-Xa (from iTAK)
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_biosynthesis
fatty acid metabolic process,
| details | | CFinderM000113 | RLK-Pelle_LRR-Xa (from iTAK)
intrinsic to endoplasmic reticulum membrane,
ADP_binding
| details | | CFinderM000247 | RLK-Pelle_LRR-Xa (from iTAK)
protein binding,
translational elongation,
| details | | CFinderM000294 | RLK-Pelle_LRR-Xa (from iTAK)
photosystem I reaction center,
photosystem I,
ATP synthesis coupled proton transport,
Photosynthesis
hydrogen ion transporting ATP synthase activity, rotational mechanism,
| details | | CFinderM000318 | RLK-Pelle_LRR-Xa (from iTAK)
thylakoid membrane organization,
cell proliferation,
growth factor activity,
extracellular region,
photosystem II,
Photosynthesis
| details | | CFinderM000362 | RLK-Pelle_LRR-Xa (from iTAK)
leucyl-tRNA aminoacylation,
guanosine tetraphosphate metabolic process,
Aminoacyl-tRNA_biosynthesis
leucine-tRNA ligase activity,
rRNA processing,
ribosome binding,
aminoacyl-tRNA_editing_activity
tRNA aminoacylation for protein translation,
| details | | CFinderM000373 | RLK-Pelle_LRR-Xa (from iTAK)
SET Transcription_Regulator(from iTAK)
[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity,
transcription termination, DNA-dependent,
RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
chloroplast,
protein refolding,
| details | | CFinderM000419 | RLK-Pelle_LRR-Xa (from iTAK)
Ribosome
Ribosome
translation,
rRNA processing,
structural constituent of ribosome,
| details | | CFinderM000464 | extrinsic to membrane,
oxygen evolving complex,
photosystem II,
Photosynthesis
RLK-Pelle_LRR-Xa (from iTAK)
calcium ion binding,
| details | | CFinderM000484 | RLK-Pelle_LRR-Xa (from iTAK)
sigma factor activity,
heat shock protein binding,
| details | | CFinderM000564 | RLK-Pelle_LRR-Xa (from iTAK)
sigma factor activity,
transcription initiation, DNA-dependent,
| details | | CFinderM000565 | Ubiquinone_and_other_terpenoid-quinone_biosynthesis
leucyl-tRNA aminoacylation,
RLK-Pelle_LRR-Xa (from iTAK)
GT2 GlycosylTransferases
Aminoacyl-tRNA_biosynthesis
SET Transcription_Regulator(from iTAK)
prenyltransferase activity,
leucine-tRNA ligase activity,
aminoacyl-tRNA_editing_activity
| details | | CFinderM000628 | RLK-Pelle_LRR-Xa (from iTAK)
C2H2 Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000669 | RLK-Pelle_LRR-Xa (from iTAK)
copper_ion_transmembrane_transport
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
copper ion transmembrane transporter activity,
| details | | CFinderM000829 | RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
isopentenyl-diphosphate delta-isomerase activity,
Terpenoid_backbone_biosynthesis
CAMK_CAMKL-CHK1 (from iTAK)
| details | | CFinderM000859 | RLK-Pelle_LRR-Xa (from iTAK)
transcription termination, DNA-dependent,
thylakoid membrane,
photosystem I,
CAMK_CDPK (from iTAK)
Photosynthesis
| details | | CFinderM000980 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
| details | | CFinderM001007 | RLK-Pelle_LRR-Xa (from iTAK)
Terpenoid_backbone_biosynthesis
isopentenyl-diphosphate delta-isomerase activity,
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
transferase activity, transferring phosphorus-containing groups,
isoprenoid biosynthetic process,
| details | | CFinderM001008 | RLK-Pelle_LRR-Xa (from iTAK)
porphobilinogen synthase activity,
coproporphyrinogen oxidase activity,
tetrapyrrole biosynthetic process,
porphyrin-containing compound biosynthetic process,
Porphyrin_and_chlorophyll_metabolism
| details | | CFinderM001137 | RLK-Pelle_LRR-Xa (from iTAK)
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
Porphyrin_and_chlorophyll_metabolism
Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
mRNA_surveillance_pathway
| details | | CFinderM001289 | RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Ascorbate_and_aldarate_metabolism
Retinol_metabolism
Porphyrin_and_chlorophyll_metabolism
Pentose_and_glucuronate_interconversions
Drug_metabolism_-_cytochrome_P450
Steroid_hormone_biosynthesis
Drug_metabolism_-_other_enzymes
| details | | CFinderM001346 | plasma membrane,
RLK-Pelle_LRR-Xa (from iTAK)
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor,
ribonuclease III activity,
| details | | CFinderM001507 | Alanine,_aspartate_and_glutamate_metabolism
purine nucleotide biosynthetic process,
RLK-Pelle_LRR-Xa (from iTAK)
adenylosuccinate synthase activity,
[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity,
AGC_RSK-2 (from iTAK)
SET Transcription_Regulator(from iTAK)
chloroplast,
Purine_metabolism
protein phosphorylation,
| details | | CFinderM001533 | RLK-Pelle_LRR-Xa (from iTAK)
cytochrome b6f complex,
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
translation,
cation binding,
structural constituent of ribosome,
alpha-amylase activity,
large ribosomal subunit,
| details |
4.Expression profilings |
