PH01002051G0210's details annotation
1.Annotation
ICBR annotation: OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed
Blast result AT1G77490 : 2.00E-156
Blast annotation: thylakoidal ascorbate peroxidase
2.Location
Scaffold: PH01002051
Strand: -
| Region | Start | End |
| gene | 114268 | 120412 |
| mRNA | 114268 | 120412 |
| exon | 114268 | 114829 |
| exon | 114981 | 115124 |
| exon | 115506 | 115610 |
| exon | 115689 | 115766 |
| exon | 115849 | 115923 |
| exon | 116481 | 116567 |
| exon | 116654 | 116721 |
| exon | 116859 | 116946 |
| exon | 117048 | 117148 |
| exon | 117244 | 117364 |
| exon | 117997 | 118062 |
| exon | 118504 | 118653 |
| exon | 119647 | 120412 |
| CDS | 114677 | 114829 |
| CDS | 114981 | 115124 |
| CDS | 115506 | 115610 |
| CDS | 115689 | 115766 |
| CDS | 115849 | 115923 |
| CDS | 116481 | 116567 |
| CDS | 116654 | 116721 |
| CDS | 116859 | 116946 |
| CDS | 117048 | 117148 |
| CDS | 117244 | 117364 |
| CDS | 117997 | 118062 |
| CDS | 118504 | 118653 |
| CDS | 119647 | 119850 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000424 | carboxylic acid metabolic process, carboxy-lyase activity, cellular amino acid metabolic process, RLK-Pelle_LRR-Xa (from iTAK) pyridoxal phosphate binding, Ascorbate_and_aldarate_metabolism Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00141.22 | peroxidase | 138 | 355 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glutathione metabolism | L-ascorbate peroxidase [EC:1.11.1.11] | ko00480 | K00434 |
| Ascorbate and aldarate metabolism | L-ascorbate peroxidase [EC:1.11.1.11] | ko00053 | K00434 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.