PH01022811G0010's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G46820 : 4.20E-36
Blast annotation: photosystem I P subunit
2.Location
Scaffold: PH01022811
Strand: +
| Region | Start | End |
| gene | 405 | 1995 |
| mRNA | 405 | 1995 |
| exon | 405 | 495 |
| exon | 580 | 683 |
| exon | 794 | 880 |
| exon | 1006 | 1068 |
| exon | 1174 | 1211 |
| exon | 1873 | 1995 |
| CDS | 405 | 495 |
| CDS | 580 | 683 |
| CDS | 794 | 880 |
| CDS | 1006 | 1068 |
| CDS | 1174 | 1211 |
| CDS | 1873 | 1933 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000424 | carboxylic acid metabolic process, carboxy-lyase activity, cellular amino acid metabolic process, RLK-Pelle_LRR-Xa (from iTAK) pyridoxal phosphate binding, Ascorbate_and_aldarate_metabolism Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14159.5 | CAAD | 62 | 144 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.