PH01000399G0860's details annotation
1.Annotation
ICBR annotation: peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
Blast result AT3G01480 : 3.00E-178
Blast annotation: cyclophilin 38
2.Location
Scaffold: PH01000399
Strand: +
| Region | Start | End |
| gene | 665466 | 670323 |
| mRNA | 665466 | 670323 |
| exon | 665466 | 666441 |
| exon | 667313 | 667603 |
| exon | 667769 | 667968 |
| exon | 668201 | 668436 |
| exon | 668685 | 668827 |
| exon | 668920 | 669021 |
| exon | 669122 | 670323 |
| CDS | 666292 | 666441 |
| CDS | 667313 | 667603 |
| CDS | 667769 | 667968 |
| CDS | 668201 | 668436 |
| CDS | 668685 | 668827 |
| CDS | 668920 | 669021 |
| CDS | 669122 | 669349 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000424 | carboxylic acid metabolic process, carboxy-lyase activity, cellular amino acid metabolic process, RLK-Pelle_LRR-Xa (from iTAK) pyridoxal phosphate binding, Ascorbate_and_aldarate_metabolism Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00160.20 | Pro_isomerase | 244 | 401 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
| GO:0006457 | protein folding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.