PH01000001G3500's details annotation
1.Annotation
ICBR annotation: transporter, major facilitator family, putative, expressed
Blast result AT5G64500 : 1.40E-77
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000001
Strand: -
| Region | Start | End |
| gene | 2265438 | 2270607 |
| mRNA | 2265438 | 2270607 |
| exon | 2265438 | 2265452 |
| exon | 2265513 | 2265630 |
| exon | 2265883 | 2265958 |
| exon | 2267007 | 2267075 |
| exon | 2267200 | 2267302 |
| exon | 2267445 | 2267519 |
| exon | 2267657 | 2267732 |
| exon | 2267821 | 2267925 |
| exon | 2268604 | 2268732 |
| exon | 2269907 | 2270607 |
| CDS | 2265444 | 2265452 |
| CDS | 2265513 | 2265630 |
| CDS | 2265883 | 2265958 |
| CDS | 2267007 | 2267075 |
| CDS | 2267200 | 2267302 |
| CDS | 2267445 | 2267519 |
| CDS | 2267657 | 2267732 |
| CDS | 2267821 | 2267925 |
| CDS | 2268604 | 2268732 |
| CDS | 2269907 | 2269998 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001420 | heat shock protein binding, Protein_processing_in_endoplasmic_reticulum unfolded protein binding, CAMK_CDPK (from iTAK) response to heat, protein folding, |
| coexpression network | CFinderM001481 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07690.15 | MFS_1 | 79 | 189 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.