PH01000002G2720's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT5G50860 : 1.90E-54
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000002
Strand: -
| Region | Start | End |
| gene | 1933389 | 1936097 |
| mRNA | 1933389 | 1936097 |
| exon | 1933389 | 1934047 |
| exon | 1934254 | 1934374 |
| exon | 1934454 | 1934554 |
| exon | 1934806 | 1935021 |
| exon | 1935109 | 1935206 |
| exon | 1935956 | 1936097 |
| CDS | 1933685 | 1934047 |
| CDS | 1934254 | 1934374 |
| CDS | 1934454 | 1934554 |
| CDS | 1934806 | 1935021 |
| CDS | 1935109 | 1935206 |
| CDS | 1935956 | 1935971 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000192 | protein serine/threonine kinase activity, protein kinase activity, exonuclease activity, protein phosphorylation, transferase activity, transferring phosphorus-containing groups, ATP binding, polysaccharide_binding RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK (from iTAK) ubiquitin ligase complex, RLK-Pelle_LRR-Xb-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 7 | 112 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.