PH01000002G2800's details annotation
1.Annotation
ICBR annotation: exostosin family domain containing protein, expressed
Blast result AT5G61840 : 0
Blast annotation: Exostosin family protein
2.Location
Scaffold: PH01000002
Strand: -
| Region | Start | End |
| gene | 1996609 | 2001074 |
| mRNA | 1996609 | 2001074 |
| exon | 1996609 | 1997136 |
| exon | 1997771 | 1997789 |
| exon | 1997895 | 1998404 |
| exon | 1998523 | 1998764 |
| exon | 1998938 | 1999326 |
| exon | 2000530 | 2001074 |
| CDS | 1996909 | 1997136 |
| CDS | 1997771 | 1997789 |
| CDS | 1997895 | 1998404 |
| CDS | 1998523 | 1998764 |
| CDS | 1998938 | 1999326 |
| CDS | 2000530 | 2000638 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001675 | GT47 GlycosylTransferases dephosphorylation, Butanoate_metabolism oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT47 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03016.14 | Exostosin | 50 | 345 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.