PH01000003G4010's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000003
Strand: -
| Region | Start | End |
| gene | 2661226 | 2663802 |
| mRNA | 2661226 | 2663802 |
| exon | 2661226 | 2662058 |
| exon | 2663141 | 2663802 |
| CDS | 2661591 | 2662058 |
| CDS | 2663141 | 2663446 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000220 | phospholipid metabolic process, N-methyltransferase activity, Phosphatidylinositol_signaling_system phosphoglycolate phosphatase activity, |
| coexpression network | CFinderM000750 | CO-like Transcription_Regulator(from PlantTFDB) C2C2-CO-like Transcription_Regulator(from iTAK) zinc ion binding, intracellular, Others Transcription_Regulator(from iTAK) actin binding, protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.