PH01000004G2930's details annotation
1.Annotation
ICBR annotation: transmembrane amino acid transporter protein, putative, expressed
Blast result AT1G08230 : 1.00E-101
Blast annotation: Transmembrane amino acid transporter family protein
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 1884022 | 1886338 |
| mRNA | 1884022 | 1886338 |
| exon | 1884022 | 1884524 |
| exon | 1884626 | 1884756 |
| exon | 1884855 | 1886338 |
| CDS | 1884245 | 1884524 |
| CDS | 1884626 | 1884756 |
| CDS | 1884855 | 1885469 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001342 | |
| coexpression network | CFinderM001343 | Golgi-associated vesicle, binding, Terpenoid_backbone_biosynthesis guanyl-nucleotide exchange factor activity, COPI vesicle coat, membrane coat, |
| coexpression network | CFinderM001377 | C2H2 Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01490.17 | Aa_trans | 41 | 325 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.