PH01000005G1220's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G54360 : 8.00E-122
Blast annotation: zinc ion binding
2.Location
Scaffold: PH01000005
Strand: -
| Region | Start | End |
| gene | 784336 | 789551 |
| mRNA | 784336 | 789551 |
| exon | 784336 | 785287 |
| exon | 785378 | 785527 |
| exon | 786294 | 786440 |
| exon | 786519 | 786606 |
| exon | 787803 | 787948 |
| exon | 788092 | 788320 |
| exon | 788405 | 789551 |
| CDS | 785240 | 785287 |
| CDS | 785378 | 785527 |
| CDS | 786294 | 786440 |
| CDS | 786519 | 786606 |
| CDS | 787803 | 787948 |
| CDS | 788092 | 788320 |
| CDS | 788405 | 788706 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000593 | nicotinate nucleotide salvage, diphosphomevalonate decarboxylase activity, nicotinate phosphoribosyltransferase activity, nicotinate-nucleotide diphosphorylase (carboxylating) activity, NAD biosynthetic process, Nicotinate_and_nicotinamide_metabolism isoprenoid biosynthetic process, Terpenoid_backbone_biosynthesis large ribosomal subunit, |
| coexpression network | CFinderM000801 | arsenite_transport arsenite transmembrane transporter activity, galactose metabolic process, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) UDP-glucose 4-epimerase activity, |
| coexpression network | CFinderM000991 | cation:chloride_symporter_activity proteasome_regulatory_particle Proteasome microtubule binding, cytokinesis ion transport, microtubule cytoskeleton organization, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13424.5 | TPR_12 | 218 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.