PH01000005G2590's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G27610 : 5.50E-54
Blast annotation: -
2.Location
Scaffold: PH01000005
Strand: +
| Region | Start | End |
| gene | 1614152 | 1616367 |
| mRNA | 1614152 | 1616367 |
| exon | 1614152 | 1616367 |
| CDS | 1614812 | 1615603 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000100 | RLK-Pelle_RLCK-IXb (from iTAK) |
| coexpression network | CFinderM000319 | nucleoside_diphosphate_phosphorylation carbohydrate phosphorylation, histone_H4_acetylation UTP biosynthetic process, CTP biosynthetic process, histone_H2A_acetylation GTP biosynthetic process, aromatic amino acid family metabolic process, chromatin remodeling, |
| coexpression network | CFinderM000429 | metal ion transport, RLK-Pelle_RLCK-IXb (from iTAK) GRAS Transcription_Regulator(from PlantTFDB) RLK-Pelle_L-LEC (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.