PH01000005G3860's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G15880 : 6.20E-29
Blast annotation: -
2.Location
Scaffold: PH01000005
Strand: -
| Region | Start | End |
| gene | 2508598 | 2515533 |
| mRNA | 2508598 | 2515533 |
| exon | 2508598 | 2509195 |
| exon | 2509286 | 2509350 |
| exon | 2509856 | 2509947 |
| exon | 2510399 | 2510460 |
| exon | 2511201 | 2511331 |
| exon | 2511526 | 2511607 |
| exon | 2511691 | 2511870 |
| exon | 2512671 | 2512793 |
| exon | 2512910 | 2512975 |
| exon | 2513416 | 2515533 |
| CDS | 2508896 | 2509195 |
| CDS | 2509286 | 2509350 |
| CDS | 2509856 | 2509947 |
| CDS | 2510399 | 2510460 |
| CDS | 2511201 | 2511331 |
| CDS | 2511526 | 2511607 |
| CDS | 2511691 | 2511870 |
| CDS | 2512671 | 2512793 |
| CDS | 2512910 | 2512975 |
| CDS | 2513416 | 2513709 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000764 | RNA-dependent DNA replication, RNA-directed DNA polymerase activity, protein import into mitochondrial outer membrane, vacuolar transport, mitochondrial outer membrane translocase complex, retromer complex, cell communication, mTERF Transcription_Regulator(from iTAK) myosin complex, phosphoric ester hydrolase activity, phosphatidylinositol binding, motor activity, RNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.