PH01000006G0430's details annotation
1.Annotation
ICBR annotation: nitrilase, putative, expressed
Blast result AT4G08790 : 3.00E-106
Blast annotation: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
2.Location
Scaffold: PH01000006
Strand: +
| Region | Start | End |
| gene | 292994 | 299069 |
| mRNA | 292994 | 299069 |
| exon | 292994 | 293392 |
| exon | 293542 | 293678 |
| exon | 294099 | 294227 |
| exon | 294633 | 294691 |
| exon | 296372 | 296484 |
| exon | 296623 | 296715 |
| exon | 297440 | 297542 |
| exon | 297865 | 297947 |
| exon | 298040 | 299069 |
| CDS | 293261 | 293392 |
| CDS | 293542 | 293678 |
| CDS | 294099 | 294227 |
| CDS | 294633 | 294691 |
| CDS | 296372 | 296484 |
| CDS | 296623 | 296715 |
| CDS | 297440 | 297542 |
| CDS | 297865 | 297947 |
| CDS | 298040 | 298081 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000020 | nitrogen compound metabolic process, GT8 GlycosylTransferases hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, Plant_hormone_signal_transduction |
| coexpression network | CFinderM000091 | Fatty_acid_elongation membrane, |
| coexpression network | CFinderM000124 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
| coexpression network | CFinderM000224 | Others Transcription_Regulator(from iTAK) mediator complex, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, RNA_polymerase_II_transcription_cofactor_activity regulation of transcription from RNA polymerase II promoter, nitrogen compound metabolic process, Drug_metabolism_-_other_enzymes Steroid_hormone_biosynthesis Retinol_metabolism Drug_metabolism_-_cytochrome_P450 Porphyrin_and_chlorophyll_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 Pentose_and_glucuronate_interconversions Ascorbate_and_aldarate_metabolism |
| coexpression network | CFinderM000285 | ABC_transporters |
| coexpression network | CFinderM000400 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
| coexpression network | CFinderM000514 | cell redox homeostasis, protein disulfide oxidoreductase activity, nitrogen compound metabolic process, electron carrier activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, |
| coexpression network | CFinderM000516 | oligopeptide transport, nitrogen compound metabolic process, |
| coexpression network | CFinderM000600 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, trehalose biosynthetic process, nitrogen compound metabolic process, |
| coexpression network | CFinderM000699 | GH18 Glycoside_Hydrolases Amino_sugar_and_nucleotide_sugar_metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, cellular protein modification process, |
| coexpression network | CFinderM000714 | nitrogen compound metabolic process, |
| coexpression network | CFinderM000836 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, cellular protein modification process, nitrogen compound metabolic process, response to stress, |
| coexpression network | CFinderM000857 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATP biosynthetic process, ATP_catabolic_process nitrogen compound metabolic process, Oxidative_phosphorylation |
| coexpression network | CFinderM000858 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) nitrogen compound metabolic process, |
| coexpression network | CFinderM000896 | Fatty_acid_elongation fatty acid biosynthetic process, transferase activity, transferring acyl groups other than amino-acyl groups, membrane, metabolic process, catalytic activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, lipid binding, lipid transport, nitrogen compound metabolic process, lipid biosynthetic process, transferase activity, transferring acyl groups, |
| coexpression network | CFinderM001071 | GH18 Glycoside_Hydrolases Amino_sugar_and_nucleotide_sugar_metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, cellular protein modification process, |
| coexpression network | CFinderM001260 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
| coexpression network | CFinderM001342 | |
| coexpression network | CFinderM001349 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, cation-transporting_ATPase_activity cation transport, |
| coexpression network | CFinderM001677 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00795.21 | CN_hydrolase | 43 | 276 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006807 | nitrogen compound metabolic process |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.