Annotation of co-expression genes

PH01000006G0760's details annotation

1.Annotation

ICBR annotation: eukaryotic translation initiation factor 5A, putative, expressed

Blast result AT1G13950 : 5.20E-77
Blast annotation: eukaryotic elongation factor 5A-1

2.Location

Scaffold: PH01000006
Strand: +

RegionStartEnd
gene506191512751
mRNA506191512751
exon506191507683
exon509667509723
exon509810509856
exon510184510223
exon510712512751
CDS507558507683
CDS509667509723
CDS509810509856
CDS510184510223
CDS510712510813

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001338GT41 GlycosylTransferases
positive regulation of translational elongation,
positive regulation of translational termination,
translational frameshifting,
peptidyl-lysine modification to hypusine,
RNA_degradation
protein binding,
ribosome binding,
translation elongation factor activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01287.19eIF-5a86155

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0003746translation elongation factor activity
GO:0006452translational frameshifting
GO:0008612peptidyl-lysine modification to hypusine
GO:0043022ribosome binding
GO:0045901positive regulation of translational elongation
GO:0045905positive regulation of translational termination

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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