Annotation of co-expression genes

PH01000006G2410's details annotation

1.Annotation

ICBR annotation: heat shock protein, putative, expressed

Blast result AT3G07770 : 0.00E+00
Blast annotation: HEAT SHOCK PROTEIN 89.1

2.Location

Scaffold: PH01000006
Strand: -

RegionStartEnd
gene15930851604965
mRNA15930851604965
exon15930851593845
exon15941491594151
exon15944111594462
exon15947731594855
exon15950901595114
exon15954431595445
exon15957051595756
exon15967521596869
exon15976871597776
exon15980991598204
exon15982911598465
exon15991831599285
exon15995901599844
exon15999251600002
exon16001081600200
exon16002941600425
exon16010761601180
exon16013081601382
exon16014951601557
exon16016341601747
exon16018271601970
exon16021021602185
exon16022791602372
exon16024591602584
exon16028151602888
exon16029831603186
exon16035161604965
CDS15938341593845
CDS15941491594151
CDS15944111594462
CDS15947731594855
CDS15950901595114
CDS15954431595445
CDS15957051595756
CDS15967521596869
CDS15976871597776
CDS15980991598204
CDS15982911598465
CDS15991831599285
CDS15995901599844
CDS15999251600002
CDS16001081600200
CDS16002941600425
CDS16010761601180
CDS16013081601382
CDS16014951601557
CDS16016341601747
CDS16018271601970
CDS16021021602185
CDS16022791602372
CDS16024591602584
CDS16028151602888
CDS16029831603186
CDS16035161603632

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000825outer membrane,
ATP binding,
Mismatch_repair
mismatched DNA binding,
Mismatch_repair
protein refolding,
DNA-directed RNA polymerase activity,
cellular protein metabolic process,
nucleobase-containing compound metabolic process,
coexpression networkCFinderM001427outer membrane,
RLK-Pelle_DLSV (from iTAK)
Protein_processing_in_endoplasmic_reticulum

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02518.25HATPase_c122249
PF00183.17HSP90287777

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumheat shock protein 90kDa betako04141K09487

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0006457protein folding
GO:0006950response to stress
GO:0051082unfolded protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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