PH01000008G2090's details annotation
1.Annotation
ICBR annotation: 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed
Blast result AT3G25860 : 8.50E-78
Blast annotation: 2-oxoacid dehydrogenases acyltransferase family protein
2.Location
Scaffold: PH01000008
Strand: +
| Region | Start | End |
| gene | 1448393 | 1450283 |
| mRNA | 1448393 | 1450283 |
| exon | 1448393 | 1448698 |
| exon | 1448746 | 1448878 |
| exon | 1448986 | 1449056 |
| exon | 1449170 | 1449253 |
| exon | 1450018 | 1450283 |
| CDS | 1448558 | 1448698 |
| CDS | 1448746 | 1448878 |
| CDS | 1448986 | 1449056 |
| CDS | 1449170 | 1449253 |
| CDS | 1450018 | 1450122 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001065 | threonine-type endopeptidase activity, endopeptidase activity, proteasome core complex, proteolysis involved in cellular protein catabolic process, Proteasome thiol oxidase activity, Protein_processing_in_endoplasmic_reticulum proteasome core complex, alpha-subunit complex, Retinol_metabolism |
| coexpression network | CFinderM001635 | Ribosome translation, Ribosome intracellular, C3H Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00198.22 | 2-oxoacid_dh | 1 | 176 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016746 | transferase activity, transferring acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.