Annotation of co-expression genes

PH01000009G0590's details annotation

1.Annotation

ICBR annotation: NADH-cytochrome b5 reductase, putative, expressed

Blast result AT5G17770 : 2.00E-118
Blast annotation: NADH:cytochrome B5 reductase 1

2.Location

Scaffold: PH01000009
Strand: -

RegionStartEnd
gene356361363392
mRNA356361363392
exon356361357507
exon357635357721
exon358421358507
exon359532359597
exon360311360400
exon360509360589
exon360748360825
exon360959361049
exon361137361278
exon362115363392
CDS357415357507
CDS357635357721
CDS358421358507
CDS359532359597
CDS360311360400
CDS360509360589
CDS360748360825
CDS360959361049
CDS361137361278
CDS362115362226

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000899glucose-6-phosphate dehydrogenase activity,
glucose metabolic process,
galactosyltransferase activity,
NADP binding,
Glutathione_metabolism
Pentose_phosphate_pathway
Glycine,_serine_and_threonine_metabolism
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate
Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin
protein glycosylation,
phosphoserine phosphatase activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides,
chorismate mutase activity,
chorismate metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00970.23FAD_binding_648146
PF00175.20NAD_binding_1156243
PF00175.20NAD_binding_1250291

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Amino sugar and nucleotide sugar metabolismcytochrome-b5 reductase [EC:1.6.2.2]ko00520K00326

10.Gene Ontology

GO AccessionGO Annotation
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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