PH01000009G1380's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT3G14730 : 1.40E-95
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000009
Strand: -
| Region | Start | End |
| gene | 878081 | 880411 |
| mRNA | 878081 | 880411 |
| exon | 878081 | 880411 |
| CDS | 878146 | 879624 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM001547 | CMGC_CLK (from iTAK) exosome_(RNase_complex) cell communication, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 18 | 43 |
| PF01535.19 | PPR | 46 | 76 |
| PF01535.19 | PPR | 118 | 144 |
| PF01535.19 | PPR | 225 | 247 |
| PF13041.5 | PPR_2 | 253 | 293 |
| PF01535.19 | PPR | 297 | 319 |
| PF01535.19 | PPR | 396 | 422 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.