PH01000013G0130's details annotation
1.Annotation
ICBR annotation: glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
Blast result AT1G09420 : 2.00E-154
Blast annotation: glucose-6-phosphate dehydrogenase 4
2.Location
Scaffold: PH01000013
Strand: +
| Region | Start | End |
| gene | 112097 | 116518 |
| mRNA | 112097 | 116518 |
| exon | 112097 | 112661 |
| exon | 113853 | 114058 |
| exon | 114174 | 114282 |
| exon | 114362 | 114402 |
| exon | 114928 | 115048 |
| exon | 115156 | 115355 |
| exon | 115882 | 116082 |
| exon | 116157 | 116518 |
| CDS | 112437 | 112661 |
| CDS | 113853 | 114058 |
| CDS | 114174 | 114282 |
| CDS | 114362 | 114402 |
| CDS | 114928 | 115048 |
| CDS | 115156 | 115355 |
| CDS | 115882 | 116082 |
| CDS | 116157 | 116397 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000532 | glucose metabolic process, glucose-6-phosphate dehydrogenase activity, Glutathione_metabolism Pentose_phosphate_pathway NADP binding, |
| coexpression network | CFinderM000776 | oxidation-reduction process, 6-phosphofructokinase complex, Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis Polycyclic_aromatic_hydrocarbon_degradation Aminobenzoate_degradation Bisphenol_degradation Limonene_and_pinene_degradation iron ion binding, heme binding, electron carrier activity, glucose-6-phosphate dehydrogenase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, glucose metabolic process, 6-phosphofructokinase activity, cofactor binding, Pentose_phosphate_pathway Fructose_and_mannose_metabolism NADP binding, NAD binding, |
| coexpression network | CFinderM001005 | GT43 GlycosylTransferases AUX/IAA Transcription_Regulator(from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) Glutathione_metabolism Pentose_phosphate_pathway glucose metabolic process, |
| coexpression network | CFinderM001707 | glucose metabolic process, valyl-tRNA aminoacylation, negative_regulation_of_transcription,_DNA-templated glucose-6-phosphate dehydrogenase activity, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis Pentose_phosphate_pathway Glutathione_metabolism tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00479.21 | G6PD_N | 60 | 156 |
| PF02781.15 | G6PD_C | 159 | 443 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose phosphate pathway | glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] | ko00030 | K00036 |
| Glutathione metabolism | glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] | ko00480 | K00036 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004345 | glucose-6-phosphate dehydrogenase activity |
| GO:0006006 | glucose metabolic process |
| GO:0050661 | NADP binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.