|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | glucose metabolic process, | 0.016519159 | GO:0006006 | | valyl-tRNA aminoacylation, | 0.016519159 | GO:0006438 | | negative_regulation_of_transcription,_DNA-templated | 0.016519159 | GO:0045892 | | glucose-6-phosphate dehydrogenase activity, | 0.024898028 | GO:0004345 | | aminoacyl-tRNA_editing_activity | 0.024898028 | GO:0002161 | | valine-tRNA ligase activity, | 0.024898028 | GO:0004832 | | Aminoacyl-tRNA_biosynthesis | 0.029033967 | KEGG | | Pentose_phosphate_pathway | 0.029033967 | KEGG | | Glutathione_metabolism | 0.029033967 | KEGG | | tRNA aminoacylation for protein translation, | 0.047303717 | GO:0006418 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000013G0130 | glucose-6-phosphate dehydrogenase 4 | AT1G09420 (2.00E-154) | | PH01000064G2010 | emp24/gp25L/p24 family/GOLD family protein | AT1G14010 (3.80E-67) | | PH01000579G0510 | ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | AT5G16715 (0.00E+00) | | PH01000678G0660 | Protein of unknown function, DUF538 | AT1G55265 (4.90E-29) | | PH01000722G0050 | PHD finger family protein | AT1G77800 (2.00E-110) | | PH01001203G0260 | Quinone reductase family protein | AT4G36750 (2.60E-80) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000058 | cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism
| details | | CFinderM000115 | Dof Transcription_Regulator(from PlantTFDB)
AUX/IAA Transcription_Regulator(from iTAK)
C2C2-Dof Transcription_Regulator(from iTAK)
TKL-Pl-4 (from iTAK)
| details | | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism
C2C2-Dof Transcription_Regulator(from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
TRAF Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
oxygen-dependent protoporphyrinogen oxidase activity,
| details | | CFinderM000492 | SCY1_SCYL1 (from iTAK)
RLK-Pelle_RLCK-IXb (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
protein binding,
protein phosphatase type 2A complex,
| details | | CFinderM000532 | glucose metabolic process,
glucose-6-phosphate dehydrogenase activity,
Glutathione_metabolism
Pentose_phosphate_pathway
NADP binding,
| details | | CFinderM000679 | chromosome organization,
glucose metabolic process,
chromosome,
Glycolysis_/_Gluconeogenesis
| details | | CFinderM000776 | oxidation-reduction process,
6-phosphofructokinase complex,
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
Polycyclic_aromatic_hydrocarbon_degradation
Aminobenzoate_degradation
Bisphenol_degradation
Limonene_and_pinene_degradation
iron ion binding,
heme binding,
electron carrier activity,
glucose-6-phosphate dehydrogenase activity,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
glucose metabolic process,
6-phosphofructokinase activity,
cofactor binding,
Pentose_phosphate_pathway
Fructose_and_mannose_metabolism
NADP binding,
NAD binding,
| details | | CFinderM000989 | cysteinyl-tRNA aminoacylation,
proton transport,
cysteine-tRNA ligase activity,
tRNA aminoacylation for protein translation,
Aminoacyl-tRNA_biosynthesis
Oxidative_phosphorylation
hydrogen-translocating pyrophosphatase activity,
| details | | CFinderM001005 | GT43 GlycosylTransferases
AUX/IAA Transcription_Regulator(from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
Glutathione_metabolism
Pentose_phosphate_pathway
glucose metabolic process,
| details | | CFinderM001126 | negative_regulation_of_transcription,_DNA-templated
RNA_degradation
| details | | CFinderM001238 | glycolysis,
fructose-bisphosphate aldolase activity,
Fructose_and_mannose_metabolism
Methane_metabolism
Carbon_fixation_in_photosynthetic_organisms
Glycolysis_/_Gluconeogenesis
Pentose_phosphate_pathway
| details | | CFinderM001425 | chromosome organization,
negative_regulation_of_transcription,_DNA-templated
chromosome,
RNA_degradation
| details | | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated
FMN binding,
| details | | CFinderM001643 | protein targeting,
protein import,
GT31 GlycosylTransferases
Protein_export
| details |
4.Expression profilings |
