PH01000064G2010's details annotation
1.Annotation
ICBR annotation: emp24/gp25L/p24 family protein, putative, expressed
Blast result AT1G14010 : 3.80E-67
Blast annotation: emp24/gp25L/p24 family/GOLD family protein
2.Location
Scaffold: PH01000064
Strand: +
| Region | Start | End |
| gene | 1207352 | 1211280 |
| mRNA | 1207352 | 1211280 |
| exon | 1207352 | 1207790 |
| exon | 1207905 | 1208114 |
| exon | 1210071 | 1210147 |
| exon | 1210252 | 1211280 |
| CDS | 1207539 | 1207790 |
| CDS | 1207905 | 1208114 |
| CDS | 1210071 | 1210147 |
| CDS | 1210252 | 1210396 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000492 | SCY1_SCYL1 (from iTAK) RLK-Pelle_RLCK-IXb (from iTAK) SWI/SNF-BAF60b Transcription_Regulator(from iTAK) protein binding, protein phosphatase type 2A complex, |
| coexpression network | CFinderM001643 | protein targeting, protein import, GT31 GlycosylTransferases Protein_export |
| coexpression network | CFinderM001707 | glucose metabolic process, valyl-tRNA aminoacylation, negative_regulation_of_transcription,_DNA-templated glucose-6-phosphate dehydrogenase activity, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis Pentose_phosphate_pathway Glutathione_metabolism tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01105.23 | EMP24_GP25L | 34 | 222 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.