PH01000678G0660's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G55265 : 4.90E-29
Blast annotation: Protein of unknown function, DUF538
2.Location
Scaffold: PH01000678
Strand: +
| Region | Start | End |
| gene | 472527 | 476039 |
| mRNA | 472527 | 476039 |
| exon | 472527 | 474157 |
| exon | 474904 | 476039 |
| CDS | 473651 | 474157 |
| CDS | 474904 | 475005 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001126 | negative_regulation_of_transcription,_DNA-templated RNA_degradation |
| coexpression network | CFinderM001425 | chromosome organization, negative_regulation_of_transcription,_DNA-templated chromosome, RNA_degradation |
| coexpression network | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated FMN binding, |
| coexpression network | CFinderM001707 | glucose metabolic process, valyl-tRNA aminoacylation, negative_regulation_of_transcription,_DNA-templated glucose-6-phosphate dehydrogenase activity, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis Pentose_phosphate_pathway Glutathione_metabolism tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04398.11 | DUF538 | 32 | 138 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.