CFinderM000058's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
cysteamine dioxygenase activity,1.07E-06GO:0047800
LBD Transcription_Regulator(from PlantTFDB)0.000266217GFam
oxidation-reduction process,0.001186344GO:0055114
Taurine_and_hypotaurine_metabolism0.010643061KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000012G0950-- (-)
PH01000014G2580global transcription factor group A2AT4G08350 (0.00E+00)
PH01000038G0840-- (-)
PH01000050G0910Calcium-binding EF-hand family proteinAT2G44310 (6.60E-35)
PH01000073G0360-- (-)
PH01000080G1130Phosphate-responsive 1 family proteinAT4G08950 (2.10E-77)
PH01000100G1500-- (-)
PH01000113G1320-AT3G52105 (2.30E-09)
PH01000146G0900Flavin-binding monooxygenase family proteinAT5G61290 (2.00E-133)
PH01000162G1230Protein of unknown function (DUF1637)AT5G39890 (6.40E-50)
PH01000172G1040Glycinamide ribonucleotide (GAR) synthetaseAT1G09830 (0.00E+00)
PH01000274G0980Arabidopsis thaliana gibberellin 2-oxidase 1AT1G78440 (1.90E-43)
PH01000289G0740-- (-)
PH01000313G0740Galactose oxidase/kelch repeat superfamily proteinAT1G51540 (1.30E-41)
PH01000317G0700Plant stearoyl-acyl-carrier-protein desaturase family proteinAT1G43800 (2.00E-137)
PH01000322G0030Thiamine pyrophosphate dependent pyruvate decarboxylase family proteinAT4G33070 (0.00E+00)
PH01000364G1150ethylene-responsive element binding proteinAT3G16770 (3.10E-25)
PH01000386G0730RNA-binding (RRM/RBD/RNP motifs) family proteinAT4G17720 (1.00E-87)
PH01000391G0190Protein of unknown function (DUF1637)AT5G15120 (9.70E-31)
PH01000391G0630LOB domain-containing protein 41AT3G02550 (4.70E-65)
PH01000407G0800early nodulin-relatedAT5G25940 (4.70E-08)
PH01000410G0260Protein of unknown function (DUF1637)AT5G15120 (1.50E-57)
PH01000510G0100respiratory burst oxidase homolog BAT1G09090 (0.00E+00)
PH01000520G0240myb domain protein 87AT4G37780 (9.10E-36)
PH01000675G0030cinnamoyl coa reductase 1AT1G15950 (7.00E-109)
PH01000679G0310Wound-responsive family proteinAT4G10270 (1.70E-09)
PH01000679G0330-- (-)
PH01000722G0050PHD finger family proteinAT1G77800 (2.00E-110)
PH01000818G0390Ubiquitin-like superfamily proteinAT4G05260 (6.50E-09)
PH01001148G0410-- (-)
PH01001181G0250-- (-)
PH01001184G0580calmodulin 7AT3G43810 (6.90E-81)
PH01001248G0220-- (-)
PH01001249G0310LOB domain-containing protein 41AT3G02550 (5.90E-58)
PH01001784G0250LOB domain-containing protein 40AT1G67100 (1.20E-58)
PH01001876G0230Oxoglutarate/iron-dependent oxygenaseAT3G28490 (3.00E-37)
PH01001940G0220-- (-)
PH01001940G0230-- (-)
PH01002166G0010Protein of unknown function (DUF1637)AT5G39890 (2.70E-48)
PH01002238G0110-- (-)
PH01002244G0090-- (-)
PH01002295G0270PPDK regulatory proteinAT4G21210 (3.00E-114)
PH01002362G0210-- (-)
PH01002626G0130-- (-)
PH01002626G0140Wound-responsive family proteinAT4G10270 (4.70E-08)
PH01002645G0260early nodulin-relatedAT5G25940 (7.00E-12)
PH01002645G0290-- (-)
PH01002859G0070myb domain protein 36AT5G57620 (1.00E-65)
PH01003768G0050-- (-)
PH01003978G0080-- (-)
PH01004061G0060Protein kinase family protein with leucine-rich repeat domainAT1G35710 (0.00E+00)
PH01004292G0050cinnamate-4-hydroxylaseAT2G30490 (3.00E-156)
PH01004628G0090alcohol dehydrogenase 1AT1G77120 (0.00E+00)
PH01188189G0010CCCH-type zinc finger family proteinAT2G19810 (3.50E-32)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000115Dof Transcription_Regulator(from PlantTFDB)
AUX/IAA Transcription_Regulator(from iTAK)
C2C2-Dof Transcription_Regulator(from iTAK)
TKL-Pl-4 (from iTAK)
details
CFinderM000178cellular glucan metabolic process,
xyloglucan:xyloglucosyl transferase activity,
cell wall,
apoplast,
GH16 Glycoside_Hydrolases
WRKY Transcription_Regulator(from PlantTFDB)
details
CFinderM000187Biotin_metabolism
Fatty_acid_biosynthesis
details
CFinderM000207anion transport,
GT8 GlycosylTransferases
RLK-Pelle_LRR-XI-1 (from iTAK)
inorganic anion exchanger activity,
details
CFinderM000310Glycine,_serine_and_threonine_metabolism
flavin adenine dinucleotide binding,
oxidoreductase activity, acting on CH-OH group of donors,
Biotin_metabolism
oxidation-reduction process,
alcohol metabolic process,
details
CFinderM000399cysteamine dioxygenase activity,
Taurine_and_hypotaurine_metabolism
Streptomycin_biosynthesis
Butirosin_and_neomycin_biosynthesis
Galactose_metabolism
Fructose_and_mannose_metabolism
details
CFinderM000431Porphyrin_and_chlorophyll_metabolism
C2C2-Dof Transcription_Regulator(from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
TRAF Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
oxygen-dependent protoporphyrinogen oxidase activity,
details
CFinderM000679chromosome organization,
glucose metabolic process,
chromosome,
Glycolysis_/_Gluconeogenesis
details
CFinderM000738metal ion transport,
metal ion binding,
WRKY Transcription_Regulator(from PlantTFDB)
details
CFinderM000989cysteinyl-tRNA aminoacylation,
proton transport,
cysteine-tRNA ligase activity,
tRNA aminoacylation for protein translation,
Aminoacyl-tRNA_biosynthesis
Oxidative_phosphorylation
hydrogen-translocating pyrophosphatase activity,
details
CFinderM001238glycolysis,
fructose-bisphosphate aldolase activity,
Fructose_and_mannose_metabolism
Methane_metabolism
Carbon_fixation_in_photosynthetic_organisms
Glycolysis_/_Gluconeogenesis
Pentose_phosphate_pathway
details
CFinderM001707glucose metabolic process,
valyl-tRNA aminoacylation,
negative_regulation_of_transcription,_DNA-templated
glucose-6-phosphate dehydrogenase activity,
aminoacyl-tRNA_editing_activity
valine-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
Pentose_phosphate_pathway
Glutathione_metabolism
tRNA aminoacylation for protein translation,
details

4.Expression profilings


Show details about module gene expression profiling