PH01003978G0080's details annotation
1.Annotation
ICBR annotation: membrane related protein CP5, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01003978
Strand: +
| Region | Start | End |
| gene | 74594 | 78579 |
| mRNA | 74594 | 78579 |
| exon | 74594 | 75823 |
| exon | 76473 | 77025 |
| exon | 77152 | 77284 |
| exon | 77477 | 77599 |
| exon | 77812 | 77922 |
| exon | 78009 | 78579 |
| CDS | 75619 | 75823 |
| CDS | 76473 | 77025 |
| CDS | 77152 | 77284 |
| CDS | 77477 | 77599 |
| CDS | 77812 | 77922 |
| CDS | 78009 | 78149 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000058 | cysteamine dioxygenase activity, LBD Transcription_Regulator(from PlantTFDB) oxidation-reduction process, Taurine_and_hypotaurine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.