Annotation of co-expression genes

PH01188189G0010's details annotation

1.Annotation

ICBR annotation: zinc finger/CCCH transcription factor, putative, expressed

Blast result AT2G19810 : 3.50E-32
Blast annotation: CCCH-type zinc finger family protein

2.Location

Scaffold: PH01188189
Strand: -

RegionStartEnd
gene18517
mRNA18517
exon18517
CDS18451

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000058cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)C3H
Transcription_Regulator(from PlantTFDB)C3H

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00642.23zf-CCCH106130

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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