Annotation of co-expression genes

PH01004292G0050's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT2G30490 : 3.00E-156
Blast annotation: cinnamate-4-hydroxylase

2.Location

Scaffold: PH01004292
Strand: -

RegionStartEnd
gene2970732060
mRNA2970732060
exon2970731723
exon3178732060
CDS3038931723
CDS3178732002

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000058cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45072508

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phenylalanine metabolismtrans-cinnamate 4-monooxygenase [EC:1.14.13.11]ko00360K00487
Phenylpropanoid biosynthesistrans-cinnamate 4-monooxygenase [EC:1.14.13.11]ko00940K00487
948 Stilbenoid, diarylheptanoid and gingerol biosynthesistrans-cinnamate 4-monooxygenase [EC:1.14.13.11]K00487
Flavonoid biosynthesistrans-cinnamate 4-monooxygenase [EC:1.14.13.11]ko00941K00487

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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