PH01004628G0090's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT1G77120 : 0.00E+00
Blast annotation: alcohol dehydrogenase 1
2.Location
Scaffold: PH01004628
Strand: -
| Region | Start | End |
| gene | 85161 | 88427 |
| mRNA | 85161 | 88427 |
| exon | 85161 | 85877 |
| exon | 85978 | 86139 |
| exon | 86239 | 86334 |
| exon | 86432 | 86493 |
| exon | 86583 | 86658 |
| exon | 86763 | 86845 |
| exon | 86937 | 87262 |
| exon | 87851 | 87897 |
| exon | 88027 | 88163 |
| exon | 88294 | 88427 |
| CDS | 85761 | 85877 |
| CDS | 85978 | 86139 |
| CDS | 86239 | 86334 |
| CDS | 86432 | 86493 |
| CDS | 86583 | 86658 |
| CDS | 86763 | 86845 |
| CDS | 86937 | 87262 |
| CDS | 87851 | 87897 |
| CDS | 88027 | 88163 |
| CDS | 88294 | 88327 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000058 | cysteamine dioxygenase activity, LBD Transcription_Regulator(from PlantTFDB) oxidation-reduction process, Taurine_and_hypotaurine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08240.11 | ADH_N | 36 | 156 |
| PF00107.25 | ADH_zinc_N | 205 | 333 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | alcohol dehydrogenase [EC:1.1.1.1] | ko00010 | K00001 |
| Fatty acid metabolism | alcohol dehydrogenase [EC:1.1.1.1] | ko01212 | K00001 |
| Tyrosine metabolism | alcohol dehydrogenase [EC:1.1.1.1] | ko00350 | K00001 |
| Retinol metabolism | alcohol dehydrogenase [EC:1.1.1.1] | ko00830 | K00001 |
| Chloroalkane and chloroalkene degradation | alcohol dehydrogenase [EC:1.1.1.1] | ko00625 | K00001 |
| Naphthalene degradation | alcohol dehydrogenase [EC:1.1.1.1] | ko00626 | K00001 |
| Metabolism of xenobiotics by cytochrome P450 | alcohol dehydrogenase [EC:1.1.1.1] | ko00980 | K00001 |
| Drug metabolism - cytochrome P450 | alcohol dehydrogenase [EC:1.1.1.1] | ko00982 | K00001 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.