PH01000520G0240's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative
Blast result AT4G37780 : 9.10E-36
Blast annotation: myb domain protein 87
2.Location
Scaffold: PH01000520
Strand: -
| Region | Start | End |
| gene | 164251 | 169382 |
| mRNA | 164251 | 169382 |
| exon | 164251 | 166304 |
| exon | 166698 | 166827 |
| exon | 167436 | 169382 |
| CDS | 165755 | 166304 |
| CDS | 166698 | 166827 |
| CDS | 167436 | 167538 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000058 | cysteamine dioxygenase activity, LBD Transcription_Regulator(from PlantTFDB) oxidation-reduction process, Taurine_and_hypotaurine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB |
| Transcription_Regulator(from PlantTFDB) | MYB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 3 | 51 |
| PF00249.30 | Myb_DNA-binding | 58 | 101 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.