Annotation of co-expression genes

PH01000322G0030's details annotation

1.Annotation

ICBR annotation: pyruvate decarboxylase isozyme 2, putative, expressed

Blast result AT4G33070 : 0.00E+00
Blast annotation: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein

2.Location

Scaffold: PH01000322
Strand: -

RegionStartEnd
gene1438719013
mRNA1438719013
exon1438714750
exon1485715045
exon1513815255
exon1534215992
exon1637416537
exon1663517383
exon1847619013
CDS1458014750
CDS1485715045
CDS1513815255
CDS1534215992
CDS1637416537
CDS1663517383
CDS1847618662

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000058cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02776.17TPP_enzyme_N182351
PF00205.21TPP_enzyme_M379486
PF02775.20TPP_enzyme_C588713

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycolysis / Gluconeogenesispyruvate decarboxylase [EC:4.1.1.1]ko00010K01568

10.Gene Ontology

GO AccessionGO Annotation
GO:0000287magnesium ion binding
GO:0003824catalytic activity
GO:0030976thiamine pyrophosphate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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