Annotation of co-expression genes

PH01000364G1150's details annotation

1.Annotation

ICBR annotation: AP2 domain containing protein, expressed

Blast result AT3G16770 : 3.10E-25
Blast annotation: ethylene-responsive element binding protein

2.Location

Scaffold: PH01000364
Strand: -

RegionStartEnd
gene741371742507
mRNA741371742507
exon741371741832
exon741936742039
exon742189742507
CDS741563741832
CDS741936742039
CDS742189742378

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000058cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)AP2/ERF-ERF
Transcription_Regulator(from PlantTFDB)ERF

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00847.19AP274123

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.