PH01000386G0730's details annotation
1.Annotation
ICBR annotation: RNA recognition motif, putative, expressed
Blast result AT4G17720 : 1.00E-87
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01000386
Strand: -
| Region | Start | End |
| gene | 427827 | 431306 |
| mRNA | 427827 | 431306 |
| exon | 427827 | 428577 |
| exon | 428667 | 428750 |
| exon | 429226 | 429301 |
| exon | 429376 | 429488 |
| exon | 429776 | 429841 |
| exon | 431221 | 431306 |
| CDS | 427912 | 428577 |
| CDS | 428667 | 428750 |
| CDS | 429226 | 429301 |
| CDS | 429376 | 429488 |
| CDS | 429776 | 429841 |
| CDS | 431221 | 431226 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000058 | cysteamine dioxygenase activity, LBD Transcription_Regulator(from PlantTFDB) oxidation-reduction process, Taurine_and_hypotaurine_metabolism |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.