Annotation of co-expression genes

PH01001184G0580's details annotation

1.Annotation

ICBR annotation: serine hydrolase domain containing protein, expressed

Blast result AT3G43810 : 6.90E-81
Blast annotation: calmodulin 7

2.Location

Scaffold: PH01001184
Strand: -

RegionStartEnd
gene403307405109
mRNA403307405109
exon403307404102
exon404889405109
CDS403729404102
CDS404889404964

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000058cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism
coexpression networkCFinderM000178cellular glucan metabolic process,
xyloglucan:xyloglucosyl transferase activity,
cell wall,
apoplast,
GH16 Glycoside_Hydrolases
WRKY Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13499.5EF-hand_71373
PF13499.5EF-hand_783146

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phosphatidylinositol signaling systemcalmodulinko04070K02183

10.Gene Ontology

GO AccessionGO Annotation
GO:0005509calcium ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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