Annotation of co-expression genes

PH01000317G0700's details annotation

1.Annotation

ICBR annotation: acyl-desaturase, chloroplast precursor, putative, expressed

Blast result AT1G43800 : 2.00E-137
Blast annotation: Plant stearoyl-acyl-carrier-protein desaturase family protein

2.Location

Scaffold: PH01000317
Strand: -

RegionStartEnd
gene458928460500
mRNA458928460500
exon458928459719
exon459850460500
CDS459150459719
CDS459850460416

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000058cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03405.13FA_desaturase_247372

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Fatty acid biosynthesisacyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2]ko00061K03921
Biosynthesis of unsaturated fatty acidsacyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2]ko01040K03921

10.Gene Ontology

GO AccessionGO Annotation
GO:0006631fatty acid metabolic process
GO:0016491oxidoreductase activity
GO:0045300acyl-[acyl-carrier-protein] desaturase activity
GO:0046914transition metal ion binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.